Mercurial > repos > gga > apollo_list_organism

comparison create_or_update_organism.py @ 12:bf5179cf1375 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b
author gga
date Wed, 10 Apr 2019 13:29:47 -0400
parents d8cd7cbe2b03
children d89a80ee8b6f
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11:d8cd7cbe2b03 12:bf5179cf1375
45 45
46 # Cleanup if existing 46 # Cleanup if existing
47 if(os.path.exists(args.jbrowse)): 47 if(os.path.exists(args.jbrowse)):
48 shutil.rmtree(args.jbrowse) 48 shutil.rmtree(args.jbrowse)
49 # Copy files 49 # Copy files
50 shutil.copytree(args.jbrowse_src, args.jbrowse) 50 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
51 51
52 path_fasta = args.jbrowse + '/seq/genome.fasta' 52 path_fasta = args.jbrowse + '/seq/genome.fasta'
53 path_2bit = args.jbrowse + '/seq/genome.2bit' 53 path_2bit = args.jbrowse + '/seq/genome.2bit'
54 54
55 # Convert fasta if existing 55 # Convert fasta if existing