Mercurial > repos > gga > apollo_list_organism

annotate list_organisms.xml @ 12:bf5179cf1375 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b
author gga
date Wed, 10 Apr 2019 13:29:47 -0400
parents 8c2e4dfc2f0d
children dce0da194937
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fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0"?>
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2 <tool id="list_organism" name="List Organisms" version="3.1">
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fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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3 <description>in Apollo</description>
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4 <macros>
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5 <import>macros.xml</import>
fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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6 </macros>
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7 <expand macro="requirements"/>
fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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8 <command detect_errors="aggressive"><![CDATA[
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9 python $__tool_directory__/list_organisms.py
fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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10 @ADMIN_AUTH@
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11 $__user_email__
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12 > $output]]></command>
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13 <inputs>
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14 </inputs>
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15 <outputs>
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16 <data format="json" name="output">
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17 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
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18 </data>
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19 </outputs>
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20 <tests>
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21 <test expect_failure="true">
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22 <expand macro="test_result" />
fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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23 </test>
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24 </tests>
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25 <help><![CDATA[
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26 **What it does**
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27
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28 Lists organism in Apollo
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30 @REFERENCES@
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31 ]]></help>
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32 <expand macro="citations"/>
fb7da5e2233f planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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33 </tool>