# HG changeset patch
# User gga
# Date 1554917205 14400
# Node ID 3e3c3ce7b1c0d8aad184b2c01a4c2a29dd2164b1
# Parent  f682567b5bee2905aaa5892dea1239e0120fcca7
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r f682567b5bee -r 3e3c3ce7b1c0 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:00:43 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 13:26:45 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'