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Modified from StringIO import StringIO ## for Python 2 to from io import StringIO ## for Python 3
author george-weingart
date Wed, 23 Jun 2021 20:52:58 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 Although this example is delimited with spaces for consistent visualization, in a PCL file each element would be delimited by one tab.
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3 Here is an example of a very small PCL file.
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5 ID Kingdom Genus Sample 1 Sample 2
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6 Cohort NA NA Test Control
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7 Age NA NA 34 43
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8 1232 Bacteria Bacteroides .23 .16
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9 543 Bacteria Dorea .001 .0021
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11 These are the different parts of the PCL file.
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13 ID Feature metadata ID Last feature metadata ID sample ID sample ID
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14 Metadata ID NA NA sample metadata sample metadata
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15 Last metadata ID NA NA sample metadata sample metadata
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16 Feature ID Feature (row) metadata Feature (row) metadata Data measurement Data measurement
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17 Feature ID Feature (row) metadata Feature (row) metadata Data measurement Data measurement