Mercurial > repos > george-weingart > metaphlan

annotate test-data/metaphlan_output @ 1:d31b701b44ee draft default tip

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Added system dependencies for bowtie2 and numpy
author george-weingart
date Mon, 19 May 2014 15:52:39 -0400
parents 9e264ec82348
children
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9e264ec82348 Uploaded first version of metaphlan into this repository
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1 k__Bacteria 97.45034
9e264ec82348 Uploaded first version of metaphlan into this repository
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2 k__Archaea 2.54966
9e264ec82348 Uploaded first version of metaphlan into this repository
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3 k__Bacteria|p__Firmicutes 66.42382
9e264ec82348 Uploaded first version of metaphlan into this repository
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4 k__Bacteria|p__Actinobacteria 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
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5 k__Bacteria|p__Proteobacteria 10.12021
9e264ec82348 Uploaded first version of metaphlan into this repository
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6 k__Bacteria|p__Chlorobi 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
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7 k__Archaea|p__Euryarchaeota 2.54966
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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8 k__Bacteria|p__Chloroflexi 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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9 k__Bacteria|p__Bacteroidetes 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
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10 k__Bacteria|p__Cyanobacteria 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
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11 k__Bacteria|p__Firmicutes|c__Clostridia 40.17564
9e264ec82348 Uploaded first version of metaphlan into this repository
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12 k__Bacteria|p__Firmicutes|c__Bacilli 26.24818
9e264ec82348 Uploaded first version of metaphlan into this repository
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13 k__Bacteria|p__Actinobacteria|c__Actinobacteria 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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14 k__Bacteria|p__Chlorobi|c__Chlorobia 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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15 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 5.74506
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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16 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria 3.28512
9e264ec82348 Uploaded first version of metaphlan into this repository
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17 k__Bacteria|p__Chloroflexi|c__Thermomicrobia 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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18 k__Archaea|p__Euryarchaeota|c__Methanobacteria 1.42305
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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19 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 1.09004
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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20 k__Archaea|p__Euryarchaeota|c__Methanomicrobia 1.0862
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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21 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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22 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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23 k__Archaea|p__Euryarchaeota|c__Thermococci 0.04042
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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24 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales 40.17564
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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25 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 26.24818
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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26 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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27 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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28 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales 2.20908
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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29 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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30 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales 2.05259
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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31 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales 2.04746
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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32 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales 1.645
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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33 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 1.42305
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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34 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales 1.09004
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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35 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales 1.0862
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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36 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales 1.02351
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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37 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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38 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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39 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales 0.05253
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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40 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales 0.04042
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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41 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae 38.18304
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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42 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae 25.64289
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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43 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
44 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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45 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae 2.20908
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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46 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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47 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae 2.05259
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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48 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae 2.04746
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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49 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis 1.9926
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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50 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae 1.645
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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51 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 1.30676
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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52 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae 1.09004
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
53 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae 1.0862
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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54 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae 1.02351
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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55 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae 0.60528
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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56 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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57 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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58 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae 0.11628
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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59 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae 0.05253
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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60 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae 0.04042
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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61 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae|g__Moorella 38.18304
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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62 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus 25.64289
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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63 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae|g__Micrococcus 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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64 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae|g__Chlorobium 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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65 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter 2.20908
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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66 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae|g__Sphaerobacter 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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67 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae|g__Shewanella 2.04746
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
68 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor 1.9926
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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69 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Edwardsiella 1.899
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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70 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio 1.645
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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71 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanosphaera 1.30676
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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72 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Delftia 1.09004
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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73 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina 1.0862
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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74 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae|g__Rhodospirillum 1.02351
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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75 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus 0.60528
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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76 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae|g__Chitinophaga 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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77 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae|g__Gloeobacter 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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78 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Pantoea 0.15359
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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79 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae|g__Methanothermus 0.11628
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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80 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae|g__Methylobacterium 0.05253
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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81 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae|g__Thermococcus 0.04042
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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82 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae|g__Moorella|s__Moorella_thermoacetica 38.18304
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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83 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus_plantarum 25.64289
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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84 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae|g__Micrococcus|s__Micrococcus_luteus 10.87008
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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85 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae|g__Chlorobium|s__Chlorobium_vibrioformis 7.39089
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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86 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides 2.20908
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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87 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae|g__Sphaerobacter|s__Sphaerobacter_thermophilus 2.0923
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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88 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae|g__Shewanella|s__Shewanella_denitrificans 2.04746
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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89 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Edwardsiella|s__Edwardsiella_tarda 1.899
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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90 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanosphaera|s__Methanosphaera_stadtmanae 1.30676
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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91 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_harveyi 1.2913
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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92 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor|s__Caldicellulosiruptor_saccharolyticus 1.13063
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
93 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Delftia|s__Delftia_acidovorans 1.09004
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
94 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri 1.0862
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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95 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae|g__Rhodospirillum|s__Rhodospirillum_rubrum 1.02351
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
diff changeset
96 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor|s__Caldicellulosiruptor_obsidiansis 0.86197
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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97 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_thermophilus 0.60528
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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98 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_cholerae 0.3537
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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99 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae|g__Chitinophaga|s__Chitinophaga_pinensis 0.30255
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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100 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae|g__Gloeobacter|s__Gloeobacter_violaceus 0.25049
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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101 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Pantoea|s__Pantoea_ananatis 0.15359
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
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102 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae|g__Methanothermus|s__Methanothermus_fervidus 0.11628
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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103 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae|g__Methylobacterium|s__Methylobacterium_extorquens 0.05253
9e264ec82348 Uploaded first version of metaphlan into this repository
george-weingart
parents:
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104 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae|g__Thermococcus|s__Thermococcus_kodakaraensis 0.04042