Mercurial > repos > george-weingart > graphlan_import
changeset 14:b084b394910e draft
Uploaded
| author | george-weingart |
|---|---|
| date | Thu, 04 Sep 2014 14:43:43 -0400 |
| parents | 66c50eadf709 |
| children | e743b0890ce2 |
| files | export2graphlan.xml |
| diffstat | 1 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/export2graphlan.xml Thu Sep 04 14:20:17 2014 -0400 +++ b/export2graphlan.xml Thu Sep 04 14:43:43 2014 -0400 @@ -9,15 +9,21 @@ --title $export_title --annotations $export_annotations --external_annotations $export_external_annotations + --background_levels $background_levels + --background_clades $background_clades --skip_rows 1,2 </command> <inputs> - <param name="export_title" type="text" format="text" label="Title" value="Title"/> - <param name="export_annotations" type="text" format="text" label="Annotations" value="2,3"/> - <param name="export_external_annotations" type="text" format="text" label="External Annotations" value="4,5,6"/> <param format="tabular" name="inp_data" type="data" label="Input used to run Lefse - See samples below - Please use Galaxy Get-Data/Upload-File. Use File-Type = Tabular" help="This is the file that was used as input for Lefse"/> <param format="lefse_res" name="out_data" type="data" label="Output of Lefse" help="This is the Lefse output file"/> + <param name="export_title" type="text" format="text" label="Title" value="Title"/> + <param name="export_annotations" type="text" format="text" label="Annotations" value="2,3"/> + <param name="export_external_annotations" type="text" format="text" label="External Annotations" value="4,5,6"/> + <param name="background_levels" type="text" format="text" label="Background Levels" value="1,2,3"/> + <param name="background_clades" type="text" format="text" label="Background Clades" /> + + </inputs> <outputs> <data name="output_annot_file" format="circl" /> @@ -40,7 +46,7 @@ * **Output of LEfSe**: This file is the result of LEfSe execute on the *Result of MetaPhlAn or HUMAnN analysis* file. This file allow GraPhlAn to highlight for you the found biomarkers. -Input parameters8888 +Input parameters9999 -------------------- --annotations ANNOTATIONS