# HG changeset patch
# User george-weingart
# Date 1410024168 14400
# Node ID c670bf87b7332014e699d7d0fbaf4878e7e4dea6
# Parent  233b2e67d6ea8bdeb79ea6698366c2c8016ec9b5
Uploaded

diff -r 233b2e67d6ea -r c670bf87b733 import2graphlan.xml
--- a/import2graphlan.xml	Fri Sep 05 17:49:20 2014 -0400
+++ b/import2graphlan.xml	Sat Sep 06 13:22:48 2014 -0400
@@ -10,25 +10,35 @@
 	--annotations $export_annotations 
 	--external_annotations $export_external_annotations
 	--background_levels  $background_levels 
-	#if $str($gchoice.background_clades)  != " ":
-               	--background_clades  $gchoice.background_clades
-	#end if
-	#if $str($gchoice.background_colors)  != " ":
-               	--background_colors  $gchoice.background_colors
-	#end if
-	#if $str($gchoice.export_title)  != " ":
-               	--title $gchoice.export_title
+
+
+	#if $str($gchoice.global_choice)  == "a":
+
+		#if $str($gchoice.background_clades)  != " ":
+		       	--background_clades  $gchoice.background_clades
+		#end if
+		#if $str($gchoice.background_colors)  != " ":
+		       	--background_colors  $gchoice.background_colors
+		#end if
+
+		#if $str($gchoice.export_title)  != " ":
+		       	--title $gchoice.export_title
+		#end if
+
+
+		--title_font_size  $gchoice.title_font_size 
+		--def_clade_size  $gchoice.def_clade_size 
+		--min_clade_size  $gchoice.min_clade_size 
+		--max_clade_size  $gchoice.max_clade_size 
+		--def_font_size  $gchoice.def_font_size 
+		--min_font_size  $gchoice.min_font_size 
+		--max_font_size  $gchoice.max_font_size 
+		--annotation_legend_font_size $gchoice.annotation_legend_font_size
+		--abundance_threshold $gchoice.abundance_threshold
+		--least_biomarkers $gchoice.least_biomarkers 	 
 	#end if
-	--title_font_size  $gchoice.title_font_size 
-	--def_clade_size  $gchoice.def_clade_size 
-	--min_clade_size  $gchoice.min_clade_size 
-	--max_clade_size  $gchoice.max_clade_size 
-	--def_font_size  $gchoice.def_font_size 
-	--min_font_size  $gchoice.min_font_size 
-	--max_font_size  $gchoice.max_font_size 
-       --annotation_legend_font_size $gchoice.annotation_legend_font_size
-	--abundance_threshold $gchoice.abundance_threshold
-	--least_biomarkers $gchoice.least_biomarkers
+
+	
 
 	--skip_rows 1,2 
    </command>
@@ -45,22 +55,7 @@
 				<option value="d" selected='True'>Default</option>
 		  		<option value="a">Advanced</option>
 			</param>
-			<when value="d">
-				<param name="background_clades" type="hidden"   value=" " />  
-				<param name="background_colors" type="hidden"  value=" " />  
-			    	<param name="export_title" type="hidden"   value=" "/>
-			    	<param name="title_font_size"  type="hidden"  value="15"/>
-			    	<param name="def_clade_size"  type="hidden" value="0"    />
-			    	<param name="min_clade_size"  type="hidden"   value="20"    />
-			    	<param name="max_clade_size"  type="hidden"  value="200"    />
-			    	<param name="def_font_size"  type="hidden"   value="10"    />
-			    	<param name="min_font_size"  type="hidden"   value="8"    />
-			    	<param name="max_font_size"  type="hidden"  value="12"    />
-			    	<param name="annotation_legend_font_size"  type="hidden"   value="10"    />
-			    	<param name="abundance_threshold"  type="hidden"   value="20.0"    />
-			    	<param name="most_abundant"  type="hidden"   value="0"    />
-				<param name="least_biomarkers"  type="hidden"   value="0"    />
-			</when>
+			 
 			<when value="a">
 				<param name="background_clades" type="text" format="text" label="Background Clades" value=" " />  
 				<param name="background_colors" type="text" format="text" label="Background Colors" value=" " />