# HG changeset patch
# User george-weingart
# Date 1410026544 14400
# Node ID 789d81a1c3891e3475c942b621eb5740c721f8d3
# Parent  d3e731ed55b15d22ddf81688b3670309ec4b23d4
Uploaded

diff -r d3e731ed55b1 -r 789d81a1c389 import2graphlan.xml
--- a/import2graphlan.xml	Sat Sep 06 13:58:26 2014 -0400
+++ b/import2graphlan.xml	Sat Sep 06 14:02:24 2014 -0400
@@ -158,7 +158,7 @@
     **--max_font_size** MAX_FONT_SIZE
                         Set the maximum font size. Default is 12
 
-    **--annotation_legend**_font_size ANNOTATION_LEGEND_FONT_SIZE
+    **--annotation_legend_font_size**  ANNOTATION_LEGEND_FONT_SIZE
                         Set the font size for the annotation legend. Default is 10
 
     **--abundance_threshold**  ABUNDANCE_THRESHOLD
@@ -181,27 +181,27 @@
 Input data matrix parameters
 ============================
 
-    --sep SEP
+    **--sep** SEP
 
-    --out_table OUT_TABLE   : This is where to write the  processed data matrix to file
+    **--out_table** OUT_TABLE   : This is where to write the  processed data matrix to file
 
-    --fname_row FNAME_ROW   :  Row number containing the names of the features (default 0, specify -1 if no names are present in the matrix)
+    **--fname_row** FNAME_ROW   :  Row number containing the names of the features (default 0, specify -1 if no names are present in the matrix)
 
-    --sname_row SNAME_ROW     column number containing the names of the samples (default 0, specify -1 if no names are present in the matrix)
+    **--sname_row** SNAME_ROW     column number containing the names of the samples (default 0, specify -1 if no names are present in the matrix)
 
-    --metadata_rows METADATA_ROWS   Row numbers to use as metadata[default None, meaning no metadata
+    **--metadata_rows** METADATA_ROWS   Row numbers to use as metadata[default None, meaning no metadata
 
-    --skip_rows SKIP_ROWS  Row numbers to skip (0-indexed, comma separated) from the input file[default None, meaning no rows skipped 
+    **--skip_rows** SKIP_ROWS  Row numbers to skip (0-indexed, comma separated) from the input file[default None, meaning no rows skipped 
 
-    --sperc SPERC         Percentile of sample value distribution for sample selection
+    **--sperc** SPERC         Percentile of sample value distribution for sample selection
 
-    --fperc FPERC         Percentile of feature value distribution for sample selection
+    **--fperc** FPERC         Percentile of feature value distribution for sample selection
 
-    --stop STOP           Number of top samples to select (ordering based on percentile specified by --sperc)
+    **--stop** STOP           Number of top samples to select (ordering based on percentile specified by --sperc)
 
-    --ftop FTOP           Number of top features to select (ordering based on percentile specified by --fperc)
+    **--ftop** FTOP           Number of top features to select (ordering based on percentile specified by --fperc)
 
-    --def_na DEF_NA       Set the default value for missing values [default None which means no replacement]
+    **--def_na** DEF_NA       Set the default value for missing values [default None which means no replacement]
 
 Integration
 ===========