# HG changeset patch
# User george-weingart
# Date 1409940773 14400
# Node ID 3b2b6c5e38e2b357d4a34b8eacc00a8d33d595e6
# Parent  82fb838d02dceba6d33e6f63061b144ba925d107
Uploaded

diff -r 82fb838d02dc -r 3b2b6c5e38e2 import2graphlan.xml
--- a/import2graphlan.xml	Fri Sep 05 14:00:09 2014 -0400
+++ b/import2graphlan.xml	Fri Sep 05 14:12:53 2014 -0400
@@ -26,18 +26,18 @@
 	--def_font_size  $def_font_size 
 	--min_font_size  $min_font_size 
 	--max_font_size  $max_font_size 
-    --annotation_legend_font_size $annotation_legend_font_size
+       --annotation_legend_font_size $annotation_legend_font_size
 	--abundance_threshold $abundance_threshold
 	--least_biomarkers $least_biomarkers
 
 	--skip_rows 1,2 
    </command>
    
-	<inputs>
+   <inputs>
 		<param format="tabular" name="inp_data" type="data" label="Input used to run Lefse" 	help="This is the file that was used as input for Lefse"/>
 		<param format="lefse_internal_res" name="out_data" type="data" label="Output of  Lefse"  help="This is the  Lefse output file"/>	
-	   	 <param name="export_annotations" type="text" format="text" label="Annotations" value="2,3"/>
-	   	 <param name="export_external_annotations" type="text" format="text" label="External Annotations" value="4,5,6"/>   
+	   	<param name="export_annotations" type="text" format="text" label="Annotations" value="2,3"/>
+	   	<param name="export_external_annotations" type="text" format="text" label="External Annotations" value="4,5,6"/>   
 		<param name="background_levels" type="text" format="text" label="Background Levels" value="1,2,3"/>   
 		<param name="background_clades" type="text" format="text" label="Background Clades" value=" " />  
 		<param name="background_colors" type="text" format="text" label="Background Colors" value=" " />  
@@ -54,11 +54,15 @@
 	    	<param name="most_abundant"  type="integer" size="4" value="0"   label=" When only lefse_input is provided, you can specify how many clades to highlight "/>
 	    	<param name="least_biomarkers"  type="integer" size="4" value="0"   label="Minimum number of biomarkers to extract  "/>
 
+        	<param name="global_choice" type="select" label="Select Global Choices" help="Select choices">
+        		<option value="d" selected='True'>Default</option>
+          		<option value="a">Advanced</option>
+        	</param>
     </inputs>
-	<outputs>
+   <outputs>
             <data  name="output_annot_file"  format="circl"  />
             <data  name="output_tree_file"  format="circl"  />
-	</outputs>
+   </outputs>
                                   
   <help>
 Overview