# HG changeset patch
# User george-weingart
# Date 1409953760 14400
# Node ID 233b2e67d6ea8bdeb79ea6698366c2c8016ec9b5
# Parent  3a06903d157b1193043812f76962e1dd2305e27b
Uploaded

diff -r 3a06903d157b -r 233b2e67d6ea import2graphlan.xml
--- a/import2graphlan.xml	Fri Sep 05 17:45:48 2014 -0400
+++ b/import2graphlan.xml	Fri Sep 05 17:49:20 2014 -0400
@@ -9,7 +9,7 @@
 
 	--annotations $export_annotations 
 	--external_annotations $export_external_annotations
-	--background_levels  $gchoice.background_levels 
+	--background_levels  $background_levels 
 	#if $str($gchoice.background_clades)  != " ":
                	--background_clades  $gchoice.background_clades
 	#end if
@@ -38,6 +38,7 @@
 		<param format="lefse_internal_res" name="out_data" type="data" label="Output of  Lefse"  help="This is the  Lefse output file"/>	
 	   	<param name="export_annotations" type="text" format="text" label="Annotations" value="2,3"/>
 	   	<param name="export_external_annotations" type="text" format="text" label="External Annotations" value="4,5,6"/>   
+		<param name="background_levels" type="text" format="text" label="Background Levels" value="1,2,3"/>  
 		
 		<conditional name="gchoice">       
 			<param name="global_choice" type="select" label="Select Global Choices" help="Select choices">
@@ -45,7 +46,6 @@
 		  		<option value="a">Advanced</option>
 			</param>
 			<when value="d">
-				<param name="background_levels" type="hidden"   value="1,2,3"/>   
 				<param name="background_clades" type="hidden"   value=" " />  
 				<param name="background_colors" type="hidden"  value=" " />  
 			    	<param name="export_title" type="hidden"   value=" "/>
@@ -62,7 +62,6 @@
 				<param name="least_biomarkers"  type="hidden"   value="0"    />
 			</when>
 			<when value="a">
-				<param name="background_levels" type="text" format="text" label="Background Levels" value="1,2,3"/>   
 				<param name="background_clades" type="text" format="text" label="Background Clades" value=" " />  
 				<param name="background_colors" type="text" format="text" label="Background Colors" value=" " />  
 			    	<param name="export_title" type="text" format="text" label="Title" value=" "/>