Mercurial > repos > george-weingart > graphlan_import

diff export2graphlan.xml @ 9:cc25a2f6b1b9 draft

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Uploaded
author george-weingart
date Thu, 04 Sep 2014 14:09:50 -0400
parents 3fb300120fe1
children 733dfa77c6de
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--- a/export2graphlan.xml	Thu Sep 04 14:06:46 2014 -0400
+++ b/export2graphlan.xml	Thu Sep 04 14:09:50 2014 -0400
@@ -40,7 +40,7 @@
 
  * **Output of LEfSe**: This file is the result of LEfSe execute on the *Result of MetaPhlAn or HUMAnN analysis* file. This file allow GraPhlAn to highlight for you the found biomarkers.
 
-Input parameters3333
+Input parameters4444
 --------------------
  
     --annotations ANNOTATIONS
@@ -119,13 +119,11 @@
 
     output parameters:
     -t TREE, --tree TREE  Output filename where save the input tree for GraPhlAn
-    -a ANNOTATION, --annotation ANNOTATION   
-    			Output filename where save GraPhlAn annotation
+    -a ANNOTATION, --annotation ANNOTATION :  This is the Output filename where to save GraPhlAn annotation
   
     Input data matrix parameters:
     --sep SEP
-    --out_table OUT_TABLE
-                        Write processed data matrix to file
+    --out_table OUT_TABLE   : This is where to write the  processed data matrix to file
     --fname_row FNAME_ROW
                         row number containing the names of the features
                         [default 0, specify -1 if no names are present in the