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changeset 3:c5584e4c1646 draft default tip

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 43caacb959b2d7b842e71737bd645be7ad155a04
author genouest
date Thu, 17 Jul 2025 10:35:37 +0000
parents c1f194d32307
children
files braker3.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/braker3.xml	Tue Jul 01 14:01:03 2025 +0000
+++ b/braker3.xml	Thu Jul 17 10:35:37 2025 +0000
@@ -10,6 +10,12 @@
         <expand macro="requirements"/>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+
+## Copy Augustus config dir to work dir, to make sure it's writable when running with containers
+cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&
+export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
+
+
 braker.pl
 --genome '${genome}'
 $softmasking
--- a/macros.xml	Tue Jul 01 14:01:03 2025 +0000
+++ b/macros.xml	Thu Jul 17 10:35:37 2025 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">3.0.8</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <container type="docker">teambraker/braker3:v3.0.7.6</container>