# HG changeset patch
# User geert-vandeweyer
# Date 1392656049 18000
# Node ID 52efdea30175ab72d145c745bc802e7b2fdbcc30
# Parent  37a8219b62de74da1a511e661f5fa56e78e5da54
Fixes. MuTect now works

diff -r 37a8219b62de -r 52efdea30175 mutect_wrapper.xml
--- a/mutect_wrapper.xml	Mon Feb 17 11:53:56 2014 -0500
+++ b/mutect_wrapper.xml	Mon Feb 17 11:54:09 2014 -0500
@@ -5,7 +5,9 @@
   </macros>
 
   <command interpreter="python">
-    mutect_wrapper.py -j "@JAR_PATH@" -T MuTect 
+    mutect_wrapper.py -j '@JAR_PATH@'
+	-T MuTect 
+	
 	#if $genomeSource.refGenomeSource == "history":
  	--ref "${genomeSource.ownFile}"
 	#else: