# HG changeset patch
# User geert-vandeweyer
# Date 1392301646 18000
# Node ID f9a746877f6c21732833db88360478b0f56e872b
# Parent  e774395351f546077a91099b82e400b193a89784
Uploaded

diff -r e774395351f5 -r f9a746877f6c readme.rst
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/readme.rst	Thu Feb 13 09:27:26 2014 -0500
@@ -0,0 +1,20 @@
+Galaxy wrapper for muTect
+=========================
+
+This wrapper is written by Geert Vandeweyer. MuTect is a software package developed at the 
+Broad Institute to analyse next-generation resequencing data. 
+
+The recommended installation is by means of the toolshed_.
+
+.. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/mutect_wrapper
+
+Galaxy should be able to install samtools dependencies automatically
+for you. muTect must be installed manually. After installation you need to edit the env.sh files that are installed together with the wrapper.
+
+You must edit the MUTECT_PATH environment variable in the file:
+
+<tool_dependency_dir>/environment_settings/MUTECT_PATH/geert-vandeweyer/mutect/<hash_string>/env.sh
+
+to point to the folder where you have installed MUTECT.
+
+