# HG changeset patch
# User geert-vandeweyer
# Date 1392656036 18000
# Node ID 37a8219b62de74da1a511e661f5fa56e78e5da54
# Parent  e670ffb1c35664bfa36857923cbb0530594f2c2b
Fixes. MuTect now works

diff -r e670ffb1c356 -r 37a8219b62de mutect_wrapper.py
--- a/mutect_wrapper.py	Mon Feb 17 11:53:44 2014 -0500
+++ b/mutect_wrapper.py	Mon Feb 17 11:53:56 2014 -0500
@@ -88,8 +88,8 @@
     #if options.params != 'pre_set':
 	
     # final command
-    command = 'java -Xmx2G -jar %s %s ' % (options.jar, arguments)
-    #print command 
+    command = 'java -Xmx2G -jar %s %s ' % (''.join(options.jar), arguments)
+    print command 
     try:
 	os.system(command)
     except: