Mercurial > repos > geert-vandeweyer > mutect_wrapper

diff mutect_wrapper.xml @ 9:b029c19bb625 draft

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author geert-vandeweyer
date Thu, 13 Feb 2014 09:34:03 -0500
parents 61799c55d169
children 72fbc37494ab
line wrap: on
line diff
--- a/mutect_wrapper.xml	Thu Feb 13 09:33:48 2014 -0500
+++ b/mutect_wrapper.xml	Thu Feb 13 09:34:03 2014 -0500
@@ -5,7 +5,7 @@
   </macros>
 
   <command interpreter="python">
-    muTect_wrapper.py -j "${GALAXY_DATA_INDEX_DIR}/shared/jars/muTect/muTect.jar" -T MuTect 
+    muTect_wrapper.py -j "@JAR_PATH@" -T MuTect 
 	#if $genomeSource.refGenomeSource == "history":
  	--ref "${genomeSource.ownFile}"
 	#else: