Mercurial > repos > geert-vandeweyer > mutect_wrapper

diff mutect_wrapper.py @ 15:37a8219b62de draft

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Fixes. MuTect now works
author geert-vandeweyer
date Mon, 17 Feb 2014 11:53:56 -0500
parents 59c387dcb2d2
children
line wrap: on
line diff
--- a/mutect_wrapper.py	Mon Feb 17 11:53:44 2014 -0500
+++ b/mutect_wrapper.py	Mon Feb 17 11:53:56 2014 -0500
@@ -88,8 +88,8 @@
     #if options.params != 'pre_set':
 	
     # final command
-    command = 'java -Xmx2G -jar %s %s ' % (options.jar, arguments)
-    #print command 
+    command = 'java -Xmx2G -jar %s %s ' % (''.join(options.jar), arguments)
+    print command 
     try:
 	os.system(command)
     except: