Mercurial > repos > geert-vandeweyer > cuffcompare
view test-data/cuffcompare_out7.txt @ 2:5ac3ca7ad18b draft default tip
Updated Test Data
| author | geert-vandeweyer |
|---|---|
| date | Sat, 02 Aug 2014 10:24:42 -0400 |
| parents | d4455014134b |
| children |
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# Cuffcompare v2.2.1 | Command line was: #cuffcompare -o cc_output -r /home/gvandeweyer/galaxy-dist/galaxy-dist/database/files/000/dataset_193.dat -e 100 -d 100 ./input1 ./input2 # #= Summary for dataset: ./input1 : # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 9 in 6 loci (9 multi-exon) # Super-loci w/ reference transcripts: 1 #--------------------| Sn | Sp | fSn | fSp Base level: 0.3 2.3 - - Exon level: 0.0 0.0 0.0 0.0 Intron level: 0.0 -nan 0.0 -nan Intron chain level: 0.0 -nan 0.0 -nan Transcript level: 0.0 0.0 0.0 0.0 Locus level: 0.0 0.0 0.0 0.0 Matching intron chains: 0 Matching loci: 0 Missed exons: 36/37 ( 97.3%) Novel exons: 49/50 ( 98.0%) Missed introns: 32/32 (100.0%) Missed loci: 5/6 ( 83.3%) Novel loci: 49/50 ( 98.0%) #= Summary for dataset: ./input2 : # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 8 in 5 loci (8 multi-exon) # Super-loci w/ reference transcripts: 0 #--------------------| Sn | Sp | fSn | fSp Base level: 0.0 0.0 - - Exon level: 0.0 0.0 0.0 0.0 Intron level: 0.0 -nan 0.0 -nan Intron chain level: 0.0 -nan 0.0 -nan Transcript level: 0.0 0.0 0.0 0.0 Locus level: 0.0 0.0 0.0 0.0 Matching intron chains: 0 Matching loci: 0 Missed exons: 34/34 (100.0%) Novel exons: 50/50 (100.0%) Missed introns: 30/30 (100.0%) Missed loci: 5/5 (100.0%) Novel loci: 50/50 (100.0%) Total union super-loci across all input datasets: 87 (0 multi-transcript, ~1.1 transcripts per locus)