comparison WebServiceToolWorkflow/getWADLMethods.py~ @ 0:e7482c82796e default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository

0:e7482c82796e

import warnings
import platform

with warnings.catch_warnings():
    warnings.simplefilter("ignore")
    from jpype._jpackage import JPackage
    from jpype import *
    import os.path
    import sys

    javahome = os.environ.get('JAVA_HOME')
    galaxyhome=os.environ.get('GALAXY_HOME')
    classpath= galaxyhome + '/tools/restclientWADL/ParserForWADL/bin'
    jarpath = galaxyhome + '/tools/restclientWADL/WADLParser/dist/lib/'
    machine = platform.machine()
    if machine == 'x86_64' :
        startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
    elif machine == 'i686' :
        startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
    elif machine == 'sun4u' :
        startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
    else :
        System.exit("Could not identify machine, please specify path to libjvm.so")

    pkg=JPackage('lsdis')
    urlToPass=java.net.URL(sys.argv[1])
    wadlUrl = sys.argv[1]
   
    outputfile=open(sys.argv[2],'w')
    outputfile.seek(0,0)
   
   
    length=(len(sys.argv))
    
    urls = []
    methods = []

    WADLParserDriver=pkg.WADLParserDriver
    wPD=WADLParserDriver()
    wPD.parse(urlToPass)
    urls = wPD.getUrl()
    methods = wPD.getCompleteMethodList()
    
    i=0
    for url in urls:
       outputfile.write(wadlUrl+"\t")
       outputfile.write(str(methods[i].getId())+"\t")
       outputfile.write(str(url)+"\n")
       i=i+1