Mercurial > repos > ganjoo > webservice_toolsuite

annotate WebServiceToolWorkflow/WebServiceTool_input_method.py @ 0:e7482c82796e default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 17:34:26 -0400
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e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 import warnings
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2 import platform
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3 import os,sys
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4 from generateClient import *
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5 from generateClient1 import *
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6
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7 '''input : wadl/wsdl/sawadl-url, method name
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8 purpose:
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9 1. Calls methods from generateClient1.py to generate client description for one-time invocation
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10 of the Web service. This client description is added as a xml file under ./clients/
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11 2. Calls methods from generateClient.py to generate client description for invocation of Web service
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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12 in a workflow. This client description is added as a xml file under ./workflowclients/
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13 3. Adds the path to the above xml files to Galaxy tool-conf.xml file using call edit_tool_conf.py
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14 '''
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15
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16 #read the url passed as an argument
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17 url = sys.argv[2]
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18
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19 #split url passed on '.' character
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20 urllist = url.split('.')
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21
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22 clientGenerator = ClientGenerator(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
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23 clientGenerator1 = ClientGenerator1(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
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24
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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25 #if url passed is of a WADL document
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26 if urllist[len(urllist)-1]=='wadl' or urllist[len(urllist)-1]=='WADL':
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27 javahome = os.environ.get('JAVA_HOME')
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28 galaxyhome=os.environ.get('GALAXY_HOME')
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29 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/bin'
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30 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/lib/'
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31 machine = platform.machine()
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32
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33 #start JVM depending on the machine. The location of libjvm.so is assumed to be standard.
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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34 #you can replace lines 32 to 41, with startJVM("LOCATION OF YOUR LIBJVM.SO","-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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35 if machine == 'x86_64' :
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36 print 'a'
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37 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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38 elif machine == 'i686' :
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39 print 'b'
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40 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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41 elif machine == 'sun4u' :
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42 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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43 else :
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44 System.exit("Could not identify machine, please specify path to libjvm.so")
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45
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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46 #generate client xml for one time invocation of a Web service
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47 clientGenerator1.wadlClient()
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48
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49 #generate client xml for invocation of a Web service in workflows
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50 clientGenerator.wadlClient()
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51
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52 #if url passed is of a WSDL 2.0 document
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53 elif urllist[len(urllist)-1]=='wsdl' or urllist[len(urllist)-1]=='WSDL':
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54 clientGenerator.wsdlClient()
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55 clientGenerator1.wsdlClient()
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56
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57 #if url passed is of a SAWADL document
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58 elif urllist[len(urllist)-1]=='sawadl' or urllist[len(urllist)-1]=='SAWADL':
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59
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60 javahome = os.environ.get('JAVA_HOME')
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61 galaxyhome=os.environ.get('GALAXY_HOME')
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62 classpath= galaxyhome + '/tools/WebServiceToolWorkflow/lib/SAWADLParser/bin'
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63 jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/lib/'
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64 machine = platform.machine()
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65
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66 if machine == 'x86_64' :
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67 print 'a'
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68 startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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69 elif machine == 'i686' :
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70 print 'b'
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71 startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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72 elif machine == 'sun4u' :
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73 startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
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74 else :
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75 print 'c'
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76 System.exit("Could not identify machine, please specify path to libjvm.so")
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77
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78 #f=open(sys.argv[5],'w')
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79 #f.write('reached here 2 \t')
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80 #f.close()
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81
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82 clientGenerator.sawadlClient()
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83 clientGenerator1.sawadlClient()
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84 #f=open(sys.argv[5],'w')
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85 #f.write('reached here 3')
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86 #f.close()
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87
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88 shutdownJVM()
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