# HG changeset patch
# User galaxyp
# Date 1537703405 14400
# Node ID c2da18b21068dcc4e6cd34006a9cef4ddf63872a
# Parent  992b0d5a7c6fbb8261a81897796d12cbc5359872
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawfileParser commit 9de08588cd6c525947f92bf475a144fcd6129fde

diff -r 992b0d5a7c6f -r c2da18b21068 thermo_converter.xml
--- a/thermo_converter.xml	Fri Sep 21 18:49:03 2018 -0400
+++ b/thermo_converter.xml	Sun Sep 23 07:50:05 2018 -0400
@@ -15,6 +15,12 @@
     #if $metadata:
         --metadata=1
     #end if
+    &&
+    #if $output_format == '0':
+        mv ./input.mgf '$output'
+    #else:
+        mv ./input.mzML '$output'
+    #end if
 ]]>
     </command>
     <inputs>