# HG changeset patch
# User galaxyp
# Date 1619007777 0
# Node ID 91f972c0f7b125f0ac0fbf5a49268865ff84438b
# Parent  b4fba9c3273637c08d9a11b8da8af71ea05cbf33
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 2d431b6ee383f3013d6de3cce64349d51642c33b"

diff -r b4fba9c32736 -r 91f972c0f7b1 test-data/really_small.indexed_mzML
--- a/test-data/really_small.indexed_mzML	Sat Apr 10 15:55:37 2021 +0000
+++ b/test-data/really_small.indexed_mzML	Wed Apr 21 12:22:57 2021 +0000
@@ -26,8 +26,8 @@
       </referenceableParamGroup>
     </referenceableParamGroupList>
     <softwareList count="1">
-      <software id="ThermoRawFileParser" version="1.3.3">
-        <cvParam cvRef="MS" accession="MS:1003145" name="ThermoRawFileParser" />
+      <software id="ThermoRawFileParser" version="1.3.4">
+        <cvParam cvRef="MS" accession="MS:1000799" value="ThermoRawFileParser" name="custom unreleased software tool" />
       </software>
     </softwareList>
     <instrumentConfigurationList count="1">
@@ -2695,78 +2695,78 @@
   </mzML>
   <indexList count="2">
     <index name="spectrum">
-      <offset idRef="controllerType=0 controllerNumber=1 scan=1">3680</offset>
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-      <offset idRef="controllerType=0 controllerNumber=1 scan=6">27236</offset>
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-      <offset idRef="controllerType=0 controllerNumber=1 scan=100">371876</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=101">379207</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=1">3720</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=2">8678</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=3">13510</offset>
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+      <offset idRef="controllerType=0 controllerNumber=1 scan=101">379247</offset>
     </index>
     <index name="chromatogram">
-      <offset idRef="BasePeak_0">385537</offset>
+      <offset idRef="BasePeak_0">385577</offset>
     </index>
   </indexList>
-  <indexListOffset>388541</indexListOffset>
-  <fileChecksum>d17fa5e67c8f89705eec985e7029ba040ec4ff8c</fileChecksum>
+  <indexListOffset>388581</indexListOffset>
+  <fileChecksum>a22a375f0d68c090984a97ff9f12d0871ab4cb73</fileChecksum>
 </indexedmzML>
\ No newline at end of file
diff -r b4fba9c32736 -r 91f972c0f7b1 test-data/really_small.mzml
--- a/test-data/really_small.mzml	Sat Apr 10 15:55:37 2021 +0000
+++ b/test-data/really_small.mzml	Wed Apr 21 12:22:57 2021 +0000
@@ -25,8 +25,8 @@
     </referenceableParamGroup>
   </referenceableParamGroupList>
   <softwareList count="1">
-    <software id="ThermoRawFileParser" version="1.3.3">
-      <cvParam cvRef="MS" accession="MS:1003145" name="ThermoRawFileParser" />
+    <software id="ThermoRawFileParser" version="1.3.4">
+      <cvParam cvRef="MS" accession="MS:1000799" value="ThermoRawFileParser" name="custom unreleased software tool" />
     </software>
   </softwareList>
   <instrumentConfigurationList count="1">
diff -r b4fba9c32736 -r 91f972c0f7b1 test-data/really_small_ext.mzml
--- a/test-data/really_small_ext.mzml	Sat Apr 10 15:55:37 2021 +0000
+++ b/test-data/really_small_ext.mzml	Wed Apr 21 12:22:57 2021 +0000
@@ -25,8 +25,8 @@
     </referenceableParamGroup>
   </referenceableParamGroupList>
   <softwareList count="1">
-    <software id="ThermoRawFileParser" version="1.3.3">
-      <cvParam cvRef="MS" accession="MS:1003145" name="ThermoRawFileParser" />
+    <software id="ThermoRawFileParser" version="1.3.4">
+      <cvParam cvRef="MS" accession="MS:1000799" value="ThermoRawFileParser" name="custom unreleased software tool" />
     </software>
   </softwareList>
   <instrumentConfigurationList count="1">
diff -r b4fba9c32736 -r 91f972c0f7b1 thermo_converter.xml
--- a/thermo_converter.xml	Sat Apr 10 15:55:37 2021 +0000
+++ b/thermo_converter.xml	Wed Apr 21 12:22:57 2021 +0000
@@ -1,7 +1,7 @@
 <tool id="thermo_raw_file_converter" name="Thermo" version="@TOOL_VERSION@+galaxy0" profile="20.05">
     <description>RAW file converter</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.3.3</token>
+        <token name="@TOOL_VERSION@">1.3.4</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">thermorawfileparser</requirement>