# HG changeset patch # User galaxyp # Date 1530692870 14400 # Node ID ee1dfac35bb318e93d6a39222cf178411eefcf70 # Parent 1e38071ab9d5f88145466688e1916a502eac1f31 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 7e04827e48352f6b28cf2e2c93a89a270e5bf026 diff -r 1e38071ab9d5 -r ee1dfac35bb3 README.rst --- a/README.rst Wed Jun 20 14:20:53 2018 -0400 +++ b/README.rst Wed Jul 04 04:27:50 2018 -0400 @@ -15,14 +15,10 @@ General Requirements -------------------- -This tool requires a Java runtime 1.6 or greater to work. To avoid out of memory errors you should set the maximum heapspace for java processes as the default is most likely too small. For example, to set this in your shell: +This tool requires a Java runtime 1.8 or greater to work. To avoid out of memory errors you should set the maximum heapspace for java processes as the default is most likely too small. For example, to set this in your shell: export _JAVA_OPTIONS='-Xmx1500M' -On some systems you may also need to adjust the amount of memory available for class definitions in addition to the maximum heapspace. For example: - - export _JAVA_OPTIONS='-Xmx1500M -XX:MaxPermSize=256M' - It is also possible to set this on a per tool basis using advanced features of the galaxy job config system. diff -r 1e38071ab9d5 -r ee1dfac35bb3 pathwaymatcher.xml --- a/pathwaymatcher.xml Wed Jun 20 14:20:53 2018 -0400 +++ b/pathwaymatcher.xml Wed Jul 04 04:27:50 2018 -0400 @@ -3,7 +3,7 @@ PathwayMatcher is a software tool to search for pathways related to a list of proteins in Reactome. - 1.8 + 1.8.1 0