diff quantp.xml @ 2:1b11db35d7b5 draft

planemo upload commit bd6bc95760db6832c77d4d2872281772c31f9039

--- a/quantp.xml	Thu Dec 20 16:05:27 2018 -0500
+++ b/quantp.xml	Wed Jan 09 16:58:43 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="quantp" name="QuanTP" version="1.1.0">
+<tool id="quantp" name="QuanTP" version="1.1.1">
     <description>Correlation between protein and transcript abundances</description>
     <requirements>
         <requirement type="package" version="1.10.4">r-data.table</requirement>
@@ -7,7 +7,7 @@
         <requirement type="package" version="3.0.0">r-ggplot2</requirement>
         <requirement type="package" version="0.4.5">r-ggfortify</requirement>
         <requirement type="package" version="4.8.0">r-plotly</requirement>
-        <requirement type="package" version="0.6.1.2">r-d3heatmap</requirement>
+        <requirement type="package" version="0.6.1.1">r-d3heatmap</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 Rscript '$__tool_directory__/quantp.r' 
@@ -114,6 +114,24 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <conditional name="experiment_design_option">
+                <param name="sample_type" value="logfold"/>
+                <param name="correction_method" value="BH"/>
+                <param name="volcano_with" value="pval"/>
+            </conditional>
+            <param name="pe_exp" value="mouse_protein_log_data.txt" ftype="tabular" />
+            <param name="te_exp" value="mouse_transcript_log_data.txt" ftype="tabular" />
+            <param name="cooksd_upper" value="4"/>
+            <param name="nclust" value="4"/>
+            <param name="hm_nclust" value="5"/>
+            <output name="html_file">
+                <assert_contents>
+                    <has_text text="SAMPLE DISTRIBUTION" />
+                    <has_text text="plotly" />
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help><![CDATA[