Mercurial > repos > galaxyp > quantp
comparison quantp.xml @ 1:dec87511835e draft
planemo upload commit 1887dff812162880d66b003a927867cd5000c98f
| author | galaxyp |
|---|---|
| date | Thu, 20 Dec 2018 16:05:27 -0500 |
| parents | f1db758949f4 |
| children | 1b11db35d7b5 |
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| 0:f1db758949f4 | 1:dec87511835e |
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| 1 <tool id="quantp" name="QuanTP" version="1.0.0"> | 1 <tool id="quantp" name="QuanTP" version="1.1.0"> |
| 2 <description>Correlation between protein and transcript abundances</description> | 2 <description>Correlation between protein and transcript abundances</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.10.4">r-data.table</requirement> | 4 <requirement type="package" version="1.10.4">r-data.table</requirement> |
| 5 <requirement type="package" version="3.0.1">r-gplots</requirement> | 5 <requirement type="package" version="3.0.1">r-gplots</requirement> |
| 6 <requirement type="package" version="0.7.6">r-dplyr</requirement> | 6 <requirement type="package" version="0.7.6">r-dplyr</requirement> |
| 7 <requirement type="package" version="3.0.0">r-ggplot2</requirement> | 7 <requirement type="package" version="3.0.0">r-ggplot2</requirement> |
| 8 <requirement type="package" version="0.4.5">r-ggfortify</requirement> | 8 <requirement type="package" version="0.4.5">r-ggfortify</requirement> |
| 9 <requirement type="package" version="4.8.0">r-plotly</requirement> | |
| 10 <requirement type="package" version="0.6.1.2">r-d3heatmap</requirement> | |
| 9 </requirements> | 11 </requirements> |
| 10 <command detect_errors="exit_code"><![CDATA[ | 12 <command detect_errors="exit_code"><![CDATA[ |
| 11 Rscript '$__tool_directory__/quantp.r' | 13 Rscript '$__tool_directory__/quantp.r' |
| 12 $experiment_design_option.sample_type | 14 $experiment_design_option.sample_type |
| 13 $experiment_design_option.method_type | 15 $experiment_design_option.method_type |
| 106 <param name="nclust" value="4"/> | 108 <param name="nclust" value="4"/> |
| 107 <param name="hm_nclust" value="5"/> | 109 <param name="hm_nclust" value="5"/> |
| 108 <output name="html_file"> | 110 <output name="html_file"> |
| 109 <assert_contents> | 111 <assert_contents> |
| 110 <has_text text="SAMPLE DISTRIBUTION" /> | 112 <has_text text="SAMPLE DISTRIBUTION" /> |
| 113 <has_text text="plotly" /> | |
| 111 </assert_contents> | 114 </assert_contents> |
| 112 </output> | 115 </output> |
| 113 </test> | 116 </test> |
| 114 </tests> | 117 </tests> |
| 115 <help><![CDATA[ | 118 <help><![CDATA[ |