Mercurial > repos > galaxyp > psm_zscore
view test-data/PSM_report_in.tsv @ 0:525f1318bb55 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/psm_zscore commit 6ea2ae47fb74320afbb88a92e3fe40b5f8f86ad1
| author | galaxyp |
|---|---|
| date | Tue, 02 May 2017 13:35:55 -0400 |
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Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation 1 NP_001419 IDKLMIEMDGTENK EK SK 90 NH2-IDKLM<ox>IEM<ox>DGTENK-COOH Oxidation of M(8, 5) Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.09529.09529.2 9529 -1.0 834.894104 2+ 2+ 1667.7746235619102 0 -0.5800106672224822 Oxidation of M (5: Very Confident, 8: Very Confident) Oxidation of M (5: 100.0, 8: 100.0) Oxidation of M (5: 100.0, 8: 100.0) 100.0 Doubtful 2 NP_001419 LMIEMDGTENK DK SK 93 NH2-LMIEM<ox>DGTENK-COOH Oxidation of M(5) Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.09211.09211.2 9211 -1.0 648.794495 2+ 2+ 1295.5737389273904 0 0.5380281170676847 Oxidation of M (5: Very Confident) Oxidation of M (2: 0.008579572548232045, 5: 99.99142042745177) Oxidation of M (5: 25.657894736842103) 100.0 Doubtful 3 NP_001419 IDKLMIEMDGTENK EK SK 90 NH2-IDKLM<ox>IEM<ox>DGTENK-COOH Oxidation of M(5, 8) Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.09410.09410.3 9410 -1.0 556.932617 3+ 3+ 1667.7746235619102 0 0.836749235076534 Oxidation of M (5: Very Confident, 8: Very Confident) Oxidation of M (5: 100.0, 8: 100.0) Oxidation of M (5: 100.0, 8: 100.0) 100.0 Doubtful 4 NP_001419 LNVTEQEKIDK KK LM 82 NH2-LNVTEQEKIDK-COOH Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.07277.07277.3 7277 -1.0 439.573456 3+ 3+ 1315.6983451935503 0 0.1466619056362385 100.0 Doubtful 5 NP_001188412, NP_001419 IGAEVYHNLK MR; MR NV; NV 91; 184 NH2-IGAEVYHNLK-COOH Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.08920.08920.2 8920 -1.0 572.311768 2+ 2+ 1142.6084079903403 0 0.5024152539610399 100.0 Doubtful 6 NP_001419 GNPTVEVDLFTSK SR GL 16 NH2-GNPTVEVDLFTSK-COOH Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.19124.19124.2 19124 -1.0 703.861816 2+ 2+ 1405.7089098772503 0 0.12018633626694622 100.0 Doubtful 7 NP_001419 LMIEMDGTENK DK SK 93 NH2-LMIEMDGTENK-COOH Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.14908.14908.2 14908 -1.0 640.796692 2+ 2+ 1279.5788243078305 0 0.005273548940125693 100.0 Doubtful 8 NP_001419 LMIEMDGTENKSK DK FG 93 NH2-LM<ox>IEM<ox>DGTENKSK-COOH Oxidation of M(5, 2) Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.05568.05568.3 5568 -1.0 509.906097 3+ 3+ 1526.6956449652205 0 0.5338465156052076 Oxidation of M (2: Very Confident, 5: Very Confident) Oxidation of M (2: 100.0, 5: 100.0) Oxidation of M (2: 100.0, 5: 100.0) 100.0 Doubtful 9 NP_001419 GNPTVEVDLFTSK SR GL 16 NH2-GNPTVEVDLFTSK-COOH Mascot formatted MGF of data 27.mgf tgriffin_cguerrer_20150128_RP_MCF7_ingeldigest_band48kb_replicate3.16695.16695.2 16695 -1.0 703.861694 2+ 2+ 1405.7089098772503 0 -0.05314316081446145 100.0 Doubtful