Mercurial > repos > galaxyp > psm_to_sam
view test-data/passedPSM.tab @ 3:ce09f1a1bbad draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm_to_sam commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
| author | galaxyp |
|---|---|
| date | Thu, 28 Jan 2016 18:40:54 -0500 |
| parents | |
| children |
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spectrum spectrumNativeID start_scan end_scan precursor_neutral_mass assumed_charge index retention_time_sec hit_rank peptide peptide_prev_aa peptide_next_aa protein num_tot_proteins calc_neutral_pep_mass massdiff num_tol_term num_missed_cleavages num_matched_ions tot_num_ions mvh mzFidelity xcorr modification NTT 00463_H12_P003361_B00L_A00_R1.9484.9484.2 controllerType=0 controllerNumber=1 scan=9484 9484 9484 1945.011203902178 2 1604 5941.1121 1 VNPTVFFDIAVDGEPLGR M V ENST00000415933.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341788.1|PPIA-007|PPIA|120 4 1944.9945272767 -0.016676625478 2 0 21 31 46.204418394943 81.978491255568 4.2761193008959291 NA 1 00463_H12_P003361_B00L_A00_R1.9501.9501.2 controllerType=0 controllerNumber=1 scan=9501 9501 9501 1945.01913847249 2 1614 5951.950699999979 1 VNPTVFFDIAVDGEPLGR M V ENST00000415933.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341788.1|PPIA-007|PPIA|120 4 1944.9945272767 -0.02461119579 2 0 26 31 60.506052773687 104.253972125002 5.3345391753673557 NA 1 00463_H12_P003361_B00L_A00_R1.9526.9526.2 controllerType=0 controllerNumber=1 scan=9526 9526 9526 1945.016452925616 2 1631 5963.759599999979 1 VNPTVFFDIAVDGEPLGR M V ENST00000415933.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341788.1|PPIA-007|PPIA|120 4 1944.9945272767 -0.021925648916 2 0 22 31 52.51658671853 86.186927014543 5.0573944690853354 NA 1 00463_H12_P003361_B00L_A00_R1.9551.9551.2 controllerType=0 controllerNumber=1 scan=9551 9551 9551 1945.01572050374 2 1650 5974.70770000002 1 VNPTVFFDIAVDGEPLGR M V ENST00000415933.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341788.1|PPIA-007|PPIA|120 4 1944.9945272767 -0.02119322704 2 0 25 31 57.801667421952 104.376405284597 5.0885360433134252 NA 1 00463_H12_P003361_B00L_A00_R1.5321.5321.2 controllerType=0 controllerNumber=1 scan=5321 5321 5321 1246.617038863116 2 444 3135.20290000002 1 KITIADCGQLE K - ENST00000355968.6|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341783.2|PPIA-002|PPIA|105 3 1246.6227377481 0.005698884984 2 1 12 19 26.789701275346 44.086444435179 2.5089015573740006 7;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.5335.5335.2 controllerType=0 controllerNumber=1 scan=5335 5335 5335 1246.62265409749 2 446 3145.3746 1 KITIADCGQLE K - ENST00000355968.6|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341783.2|PPIA-002|PPIA|105 3 1246.6227377481 8.36506098949e-05 2 1 12 19 22.053623255921 42.660663132368 2.6259103034973146 7;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.5355.5355.2 controllerType=0 controllerNumber=1 scan=5355 5355 5355 1246.61923612874 2 452 3156.474 1 KITIADCGQLE K - ENST00000355968.6|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341783.2|PPIA-002|PPIA|105 3 1246.6227377481 0.00350161936 2 1 16 19 34.764799517588 65.279222439398 3.3673483355291189 7;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.5376.5376.2 controllerType=0 controllerNumber=1 scan=5376 5376 5376 1246.620334761552 2 458 3166.7412 1 KITIADCGQLE K - ENST00000355968.6|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341783.2|PPIA-002|PPIA|105 3 1246.6227377481 0.002402986548 2 1 12 19 27.430886582989 47.577287392774 2.5777545196354388 7;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.5749.5749.2 controllerType=0 controllerNumber=1 scan=5749 5749 5749 1336.61008293189 2 524 3385.38760000002 1 YALYDATYETK R E ENST00000298159.6|ENSG00000165410.10|OTTHUMG00000029536.7|OTTHUMT00000276638.1|CFL2-001|CFL2|166 12 1336.6186979513 0.00861501941 2 0 14 19 25.105650388807 55.928640379435 2.1785177153468132 NA 2 00463_H12_P003361_B00L_A00_R1.5754.5754.2 controllerType=0 controllerNumber=1 scan=5754 5754 5754 1336.62167753499 2 525 3389.22919999998 1 YALYDATYETK R E ENST00000298159.6|ENSG00000165410.10|OTTHUMG00000029536.7|OTTHUMT00000276638.1|CFL2-001|CFL2|166 12 1336.6186979513 -0.00297958369 2 0 13 19 24.129759484342 49.379626376266 2.2121857662796973 NA 2 00463_H12_P003361_B00L_A00_R1.5774.5774.2 controllerType=0 controllerNumber=1 scan=5774 5774 5774 1336.621311324052 2 527 3401.74570000002 1 YALYDATYETK R E ENST00000298159.6|ENSG00000165410.10|OTTHUMG00000029536.7|OTTHUMT00000276638.1|CFL2-001|CFL2|166 12 1336.6186979513 -0.002613372752 2 0 12 19 24.388296643559 44.683514877427 1.7531160330057145 NA 2 00463_H12_P003361_B00L_A00_R1.7218.7218.2 controllerType=0 controllerNumber=1 scan=7218 7218 7218 1339.777197189702 2 824 4312.7532 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.006080921302 2 0 16 25 22.681295676754 54.618435522774 2.5399510658740998 NA 2 00463_H12_P003361_B00L_A00_R1.7221.7221.2 controllerType=0 controllerNumber=1 scan=7221 7221 7221 1339.772800581866 2 825 4314.25129999998 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.001684313466 2 0 16 25 26.909329916142 50.650277740631 1.9263482891201973 NA 2 00463_H12_P003361_B00L_A00_R1.7240.7240.2 controllerType=0 controllerNumber=1 scan=7240 7240 7240 1339.778659956866 2 831 4325.60770000002 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.007543688466 2 0 16 25 36.67045971257 58.855828722104 3.2758580466851592 NA 2 00463_H12_P003361_B00L_A00_R1.7263.7263.2 controllerType=0 controllerNumber=1 scan=7263 7263 7263 1339.77890409749 2 844 4337.22760000002 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.00778782909 2 0 20 25 48.296221687223 83.778882039436 4.2370695855587721 NA 2 00463_H12_P003361_B00L_A00_R1.7286.7286.2 controllerType=0 controllerNumber=1 scan=7286 7286 7286 1339.779148238116 2 857 4347.600899999999 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.008031969716 2 0 19 25 50.929079797825 74.060801211975 3.5908124986244365 NA 2 00463_H12_P003361_B00L_A00_R1.7307.7307.2 controllerType=0 controllerNumber=1 scan=7307 7307 7307 1339.781101363116 2 867 4358.570400000001 1 LGGSAVISLEGKPL K - ENST00000308162.5|ENSG00000172757.8|OTTHUMG00000166602.3|-|CFL1-201|CFL1|166 7 1339.7711162684 -0.009985094716 2 0 18 25 30.672214386423 65.432231931785 3.2431760800898073 NA 2 00463_H12_P003361_B00L_A00_R1.7350.7350.2 controllerType=0 controllerNumber=1 scan=7350 7350 7350 1830.925144331866 2 885 4380.76420000002 1 SIYGEKFEDENFILK K H ENST00000415933.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341788.1|PPIA-007|PPIA|120 2 1830.9039809349 -0.021163396966 2 1 12 26 22.49087533635 35.874605053812 2.716855755531788 NA 2 00463_H12_P003361_B00L_A00_R1.7441.7441.2 controllerType=0 controllerNumber=1 scan=7441 7441 7441 1378.767429488116 2 915 4444.20640000002 1 VSFELFADKVPK R T ENST00000451562.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341787.1|PPIA-006|PPIA|121 1 1378.7496525448 -0.017776943316 2 1 16 21 21.321034087967 57.231366553646 2.6742705414295198 NA 2 00463_H12_P003361_B00L_A00_R1.7457.7457.2 controllerType=0 controllerNumber=1 scan=7457 7457 7457 1378.765598433428 2 922 4454.574499999981 1 VSFELFADKVPK R T ENST00000451562.1|ENSG00000196262.9|OTTHUMG00000023687.5|OTTHUMT00000341787.1|PPIA-006|PPIA|121 1 1378.7496525448 -0.015945888628 2 1 13 21 25.258094726623 42.632914152441 2.9917362130850553 NA 2 00463_H12_P003361_B00L_A00_R1.7898.7898.2 controllerType=0 controllerNumber=1 scan=7898 7898 7898 1877.938938277178 2 1069 4740.2052 1 LQSSDGEIFEVDVEIAK K Q ENST00000328392.6|ENSG00000113558.14|OTTHUMG00000129117.4|OTTHUMT00000381585.1|SKP1-008|SKP1|158 11 1877.925838589 -0.013099688178 2 0 15 29 30.982918349008 45.100000325963 2.5511644269704821 NA 2 00463_H12_P003361_B00L_A00_R1.7915.7915.2 controllerType=0 controllerNumber=1 scan=7915 7915 7915 1877.944797652178 2 1075 4750.93900000002 1 LQSSDGEIFEVDVEIAK K Q ENST00000328392.6|ENSG00000113558.14|OTTHUMG00000129117.4|OTTHUMT00000381585.1|SKP1-008|SKP1|158 11 1877.925838589 -0.018959063178 2 0 20 29 42.823475332379 68.583054386532 3.9013459840655327 NA 2 00463_H12_P003361_B00L_A00_R1.7933.7933.2 controllerType=0 controllerNumber=1 scan=7933 7933 7933 1877.945163863116 2 1079 4762.56970000002 1 LQSSDGEIFEVDVEIAK K Q ENST00000328392.6|ENSG00000113558.14|OTTHUMG00000129117.4|OTTHUMT00000381585.1|SKP1-008|SKP1|158 11 1877.925838589 -0.019325274116 2 0 19 29 33.995138549471 64.962929439795 3.6298434626102449 NA 2 00463_H12_P003361_B00L_A00_R1.7952.7952.2 controllerType=0 controllerNumber=1 scan=7952 7952 7952 1387.76279081624 2 1086 4775.11819999998 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.01682666584 2 0 10 22 23.465486209266 34.687015321513 2.3075107035519555 NA 2 00463_H12_P003361_B00L_A00_R1.7957.7957.2 controllerType=0 controllerNumber=1 scan=7957 7957 7957 1387.751074142828 2 1089 4777.3443 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.005109992428 2 0 14 22 29.433875299502 49.269857725193 2.6334667768120767 NA 2 00463_H12_P003361_B00L_A00_R1.7966.7966.2 controllerType=0 controllerNumber=1 scan=7966 7966 7966 1877.942724533452 2 1092 4782.29890000002 1 LQSSDGEIFEVDVEIAK K Q ENST00000328392.6|ENSG00000113558.14|OTTHUMG00000129117.4|OTTHUMT00000381585.1|SKP1-008|SKP1|158 11 1877.925838589 -0.016885944452 2 0 13 29 22.326192518883 35.623838450184 2.4770750341773033 NA 2 00463_H12_P003361_B00L_A00_R1.7972.7972.2 controllerType=0 controllerNumber=1 scan=7972 7972 7972 1387.757175581866 2 1093 4786.41259999998 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.011211431466 2 0 14 22 35.87498786185 46.219644010662 2.9282210849818773 NA 2 00463_H12_P003361_B00L_A00_R1.7988.7988.2 controllerType=0 controllerNumber=1 scan=7988 7988 7988 1387.759983199052 2 1100 4796.7516 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.014019048652 2 0 15 22 26.459097532541 56.783446281888 3.0687246401488779 NA 2 00463_H12_P003361_B00L_A00_R1.8003.8003.2 controllerType=0 controllerNumber=1 scan=8003 8003 8003 1387.760105269366 2 1104 4807.34830000002 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.014141118966 2 0 15 22 32.648477269597 60.489969121946 3.0482543933033943 NA 2 00463_H12_P003361_B00L_A00_R1.8021.8021.2 controllerType=0 controllerNumber=1 scan=8021 8021 8021 1387.76474394124 2 1110 4818.8241 1 ASGQAFELILSPR R S ENST00000357865.2|ENSG00000117632.16|OTTHUMG00000007389.2|OTTHUMT00000019357.1|STMN1-003|STMN1|149 6 1387.7459641504 -0.01877979084 2 0 13 22 24.948802158747 45.99273175144 2.5623559864997865 NA 2 00463_H12_P003361_B00L_A00_R1.8575.8575.2 controllerType=0 controllerNumber=1 scan=8575 8575 8575 2349.046362228766 2 1287 5218.83700000002 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.024421358666 2 0 13 29 26.277655446584 36.709062494236 3.4111691149663521 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8581.8581.2 controllerType=0 controllerNumber=1 scan=8581 8581 8581 2349.04501737874 2 1288 5222.74060000002 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.02307650864 2 0 23 29 50.024579363667 92.315246147479 4.5286496783290753 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8605.8605.2 controllerType=0 controllerNumber=1 scan=8605 8605 8605 2349.050144331866 2 1301 5233.99309999998 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.028203461766 2 0 22 29 52.634472048776 91.483429905977 4.1929949165213589 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8620.8620.2 controllerType=0 controllerNumber=1 scan=8620 8620 8620 2349.040502853766 2 1310 5241.32689999998 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.018561983666 2 0 19 29 31.861371342706 64.997046778589 3.8285629652359816 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8630.8630.2 controllerType=0 controllerNumber=1 scan=8630 8630 8630 2349.062351363116 2 1317 5245.7199 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.040410493016 2 0 18 29 36.68891757627 64.187787867916 4.0132409641103282 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8637.8637.2 controllerType=0 controllerNumber=1 scan=8637 8637 8637 2349.044409103766 2 1320 5251.05079999998 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.022468233666 2 0 19 29 37.546297128072 64.706228542971 3.3201605243652543 5;160.0306484778 2 00463_H12_P003361_B00L_A00_R1.8644.8644.2 controllerType=0 controllerNumber=1 scan=8644 8644 8644 2349.05600786004 2 1322 5255.85700000002 1 NAFACFDEEATGTIQEDYLR R E ENST00000217652.3|ENSG00000101608.8|OTTHUMG00000131509.5|OTTHUMT00000254364.2|MYL12A-001|MYL12A|171 9 2349.0219408701 -0.034066989941 2 0 16 29 33.932138985108 49.510819522371 3.4363613879741899 5;160.0306484778 2