Mercurial > repos > galaxyp > psm_to_sam

diff PSM2SAM.R @ 9:d9eba92cce55 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm2sam commit 969036a4673f5565185badb0d4fe513a7b784261
author galaxyp
date Mon, 25 Sep 2017 13:23:30 -0400
parents cd69250e1150
children 95273383af5c
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--- a/PSM2SAM.R	Thu May 18 12:28:43 2017 -0400
+++ b/PSM2SAM.R	Mon Sep 25 13:23:30 2017 -0400
@@ -53,14 +53,14 @@
     }
 
     # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github)
-    download.file("https://github.com/chambm/customProDB/archive/master.zip", "customProDB.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/customProDB/archive/c57e5498392197bc598a18c26acb70d7530a921c.zip", "customProDB.zip", quiet=TRUE)
     unzip("customProDB.zip")
-    devtools::load_all("customProDB-master")
+    devtools::load_all("customProDB-c57e5498392197bc598a18c26acb70d7530a921c")
 
     # load proBAMr from GitHub
-    download.file("https://github.com/chambm/proBAMr/archive/master.zip", "proBAMr.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/proBAMr/archive/a03edf68f51215be40717c5374f39ce67bd2e68b.zip", "proBAMr.zip", quiet=TRUE)
     unzip("proBAMr.zip")
-    devtools::load_all("proBAMr-master")
+    devtools::load_all("proBAMr-a03edf68f51215be40717c5374f39ce67bd2e68b")
     
     psmInputLength = length(idpDB_file)+length(pepXmlTab_file)+length(peptideShakerPsmReport_file)
     if (psmInputLength == 0)