view test-data/result_3.json @ 0:fd5af6775e87 draft default tip

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labelfreeproteinquantification commit 3d3272b1ebe527f4b1e80c08f915c6235625621c"
author galaxyp
date Wed, 13 Oct 2021 18:44:47 +0000
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            {
                "ModificationFilter": {
                    "Case": "UseOnly",
                    "Fields": [
                        [
                            {
                                "Case": "Acetylation'ProtNTerm'"
                            },
                            {
                                "Case": "Carbamidomethyl'Cys'"
                            },
                            {
                                "Case": "Oxidation'Met'"
                            },
                            {
                                "Case": "Phosphorylation'Ser'Thr'Tyr'"
                            },
                            {
                                "Case": "Pyro_Glu'GluNterm'"
                            },
                            {
                                "Case": "Pyro_Glu'GlnNterm'"
                            },
                        ]
                    ]
                },
                "AggregatePeptideChargeStatesParams": {
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                                    {
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                                                {
                                                    "Case": "Substract",
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                                                        "Case": "IsBiggerThan",
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                                                        "Case": "Stdev",
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                                                        ]
                                                    }
                                                ]
                                            ]
                                        },
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                                ]
                            },
                            "Aggregation": {
                                "Light": {
                                    "Case": "Median"
                                }
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                        }
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                },
                "AggregateModifiedPeptidesParams": {
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                                    {
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                },
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