# HG changeset patch
# User galaxyp
# Date 1541697697 18000
# Node ID f0878264784c71fb6a0c3cbf6e4fe2aa3b630988
# Parent  80ed6522192cd86ab1e3deeb83d9d5480969445d
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f420e6a9af6569a7fe61702c7d273030a36e84dd

diff -r 80ed6522192c -r f0878264784c macros.xml
--- a/macros.xml	Fri Oct 12 08:55:43 2018 -0400
+++ b/macros.xml	Thu Nov 08 12:21:37 2018 -0500
@@ -54,8 +54,8 @@
 
     </token>
     <token name="@SEARCHGUI_MAJOR_VERSION@">3</token>
-    <token name="@SEARCHGUI_VERSION@">3.3.5</token>
-    <token name="@PEPTIDESHAKER_VERSION@">1.16.31</token>
+    <token name="@SEARCHGUI_VERSION@">3.3.6</token>
+    <token name="@PEPTIDESHAKER_VERSION@">1.16.32</token>
     <xml name="general_options">
 
         <section name="protein_digest_options" expanded="false" title="Protein Digestion Options">
diff -r 80ed6522192c -r f0878264784c peptide_shaker.xml
--- a/peptide_shaker.xml	Fri Oct 12 08:55:43 2018 -0400
+++ b/peptide_shaker.xml	Thu Nov 08 12:21:37 2018 -0500
@@ -378,7 +378,7 @@
             <param name="mzidentml_creation" value="0"/>
             <param name="zip_output_boolean" value="separate"/>
             <param name="output_reports" value="0,1,2,3,4,5,6,7,8,9,10,11"/>
-            <output name="output_certificate" file="peptide_shaker_modifications_result1.output_certificate" ftype="txt" lines_diff="6"/>
+            <output name="output_certificate" file="peptide_shaker_modifications_result1.output_certificate" ftype="txt" lines_diff="8"/>
             <output name="output_hierarchical" file="peptide_shaker_modifications_result1.output_hierarchical" ftype="tabular"/>
             <output name="output_extended_psm" file="peptide_shaker_modifications_result1.output_extended_psm" ftype="tabular"/>
             <output name="output_psm" file="peptide_shaker_modifications_result1.output_psm" ftype="tabular"/>