# HG changeset patch
# User galaxyp
# Date 1484334929 18000
# Node ID 2375ad43661f9f7f04cfecb2db233076f4eebf8a
# Parent  ef4ac2d49ff02003a4ed878a5159b72f10e2b415
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit bdb5ee12705a3494eee96d1963f16f68bbe41d5c

diff -r ef4ac2d49ff0 -r 2375ad43661f searchgui.xml
--- a/searchgui.xml	Fri Jan 13 10:16:20 2017 -0500
+++ b/searchgui.xml	Fri Jan 13 14:15:29 2017 -0500
@@ -1100,7 +1100,7 @@
             <param name="xtandem.xtandem_advanced" value="yes"/>
             <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/>
 
-            <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> 
+            <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" /> 
         </test>
         <!-- Test that search works with MSAmanda -->
         <test>
@@ -1113,7 +1113,7 @@
             <param name="max_charge" value="3"/>
             <param name="engines" value="MS_Amanda"/>
 
-            <output name="output" file="tiny_searchgui_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> 
+            <output name="output" file="tiny_searchgui_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="5000" /> 
         </test>
     </tests>
     <help>
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_certificate_result2.txt
--- a/test-data/peptide_shaker_certificate_result2.txt	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_certificate_result2.txt	Fri Jan 13 14:15:29 2017 -0500
@@ -1,9 +1,9 @@
 Project Details1: PeptideShaker Version: 1.13.6
-2: Date: Fri Jan 13 06:54:39 CST 2017
-3: Experiment: Galaxy_Experiment_2017011306531484312022
-4: Sample: Sample_2017011306531484312022
+2: Date: Fri Jan 13 11:06:50 CST 2017
+3: Experiment: Galaxy_Experiment_2017011311051484327131
+4: Sample: Sample_2017011311051484327131
 5: Replicate Number: 1
-6: Identification Algorithms: OMSSA, X!Tandem, MS-GF+ and Comet
+6: Identification Algorithms: OMSSA, X!Tandem, MS-GF+, Comet and MyriMatch
 Database Search Parameters
 
 1: Precursor Tolerance Unit: ppm
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_hierarchical_result2.tabular
--- a/test-data/peptide_shaker_hierarchical_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_hierarchical_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,79 +1,79 @@
 	Main Accession	Description	MW [kDa]	Possible Coverage [%]	Coverage [%]	Spectrum Counting NSAF	Confidently Localized Modification Sites	# Confidently Localized Modification Sites	Ambiguously Localized Modification Sites	#Ambiguously Localized Modification Sites	Protein Inference	Secondary Accessions	Protein Group	#Validated Peptides	#Peptides	#Unique	#Validated PSMs	#PSMs	Confidence [%]	Decoy	Validation
-1	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91		69.96963713242043	100.0	3.25	0.0032520325203252032					Related Proteins	cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	1	1	1	2	2	100.0	0	Doubtful
+1	cds.comp41779_c0_seq1	m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67	69.88215380565927	92.52	37.58	0.017651472642866785					Related Proteins	cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	15	15	15	40	40	100.0	0	Doubtful
 	Protein(s)	Sequence	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	#Validated PSMs	#PSMs	Confidence [%]	Decoy	Validation
-1.1	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ				2	2	100.0	0	Doubtful
+1.1	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS				4	4	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-1.1.1	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747	0				100.0	Doubtful
-1.1.2	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747	0				100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67		69.88215380565927	92.52	37.58	0.017651472642866785					Related Proteins	cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	15	15	15	40	40	100.0	0	Doubtful
-	Protein(s)	Sequence	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	#Validated PSMs	#PSMs	Confidence [%]	Decoy	Validation
-2.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS				4	4	100.0	0	Doubtful
+1.1.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939	0				100.0	Doubtful
+1.1.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939	0				100.0	Doubtful
+1.1.3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364	0				100.0	Doubtful
+1.1.4	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364	0				100.0	Doubtful
+1.2	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS				4	4	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.1.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939	0				100.0	Doubtful
-2.1.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939	0				100.0	Doubtful
-2.1.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364	0				100.0	Doubtful
-2.1.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364	0				100.0	Doubtful
-2.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS				4	4	100.0	0	Doubtful
+1.2.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501	0				100.0	Doubtful
+1.2.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069	0				100.0	Doubtful
+1.2.3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501	0				100.0	Doubtful
+1.2.4	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069	0				100.0	Doubtful
+1.3	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	SLQAENEQLR	VR; VR	LK; LK				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.2.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501	0				100.0	Doubtful
-2.2.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069	0				100.0	Doubtful
-2.2.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501	0				100.0	Doubtful
-2.2.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069	0				100.0	Doubtful
-2.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	VR; VR	LK; LK				2	2	100.0	0	Doubtful
+1.3.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883	0				100.0	Doubtful
+1.3.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883	0				100.0	Doubtful
+1.4	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.3.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883	0				100.0	Doubtful
-2.3.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883	0				100.0	Doubtful
-2.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL				2	2	100.0	0	Doubtful
+1.4.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787	0				100.0	Doubtful
+1.4.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787	0				100.0	Doubtful
+1.5	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	MEIITITNQLQR	MK; MK	SN; SN				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.4.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787	0				100.0	Doubtful
-2.4.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787	0				100.0	Doubtful
-2.5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	MK; MK	SN; SN				2	2	100.0	0	Doubtful
+1.5.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245	0				100.0	Doubtful
+1.5.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245	0				100.0	Doubtful
+1.6	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	YESQLSQIR	AR; AR	QS; QS				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.5.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245	0				100.0	Doubtful
-2.5.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245	0				100.0	Doubtful
-2.6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	AR; AR	QS; QS				2	2	100.0	0	Doubtful
+1.6.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653	0				100.0	Doubtful
+1.6.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653	0				100.0	Doubtful
+1.7	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV				4	4	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.6.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653	0				100.0	Doubtful
-2.6.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653	0				100.0	Doubtful
-2.7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV				4	4	100.0	0	Doubtful
+1.7.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312	0				100.0	Doubtful
+1.7.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754	0				100.0	Doubtful
+1.7.3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754	0				100.0	Doubtful
+1.7.4	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312	0				100.0	Doubtful
+1.8	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	LK; LK	IN; IN				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.7.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312	0				100.0	Doubtful
-2.7.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754	0				100.0	Doubtful
-2.7.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754	0				100.0	Doubtful
-2.7.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312	0				100.0	Doubtful
-2.8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	LK; LK	IN; IN				2	2	100.0	0	Doubtful
+1.8.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005	0				100.0	Doubtful
+1.8.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005	0				100.0	Doubtful
+1.9	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.8.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005	0				100.0	Doubtful
-2.8.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005	0				100.0	Doubtful
-2.9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS				2	2	100.0	0	Doubtful
+1.9.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349	0				100.0	Doubtful
+1.9.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349	0				100.0	Doubtful
+1.10	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE				4	4	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.9.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349	0				100.0	Doubtful
-2.9.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349	0				100.0	Doubtful
-2.10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE				4	4	100.0	0	Doubtful
+1.10.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375	0				100.0	Doubtful
+1.10.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375	0				100.0	Doubtful
+1.10.3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414	0				100.0	Doubtful
+1.10.4	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414	0				100.0	Doubtful
+1.11	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	GR; GR	DM; DM				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.10.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375	0				100.0	Doubtful
-2.10.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375	0				100.0	Doubtful
-2.10.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414	0				100.0	Doubtful
-2.10.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414	0				100.0	Doubtful
-2.11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	GR; GR	DM; DM				2	2	100.0	0	Doubtful
+1.11.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406	0				100.0	Doubtful
+1.11.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406	0				100.0	Doubtful
+1.12	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	INEDRIDELQDKVNK	AR; AR	LI; LI				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.11.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406	0				100.0	Doubtful
-2.11.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406	0				100.0	Doubtful
-2.12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	AR; AR	LI; LI				2	2	100.0	0	Doubtful
+1.12.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223	0				100.0	Doubtful
+1.12.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223	0				100.0	Doubtful
+1.13	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.12.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223	0				100.0	Doubtful
-2.12.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223	0				100.0	Doubtful
-2.13	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS				2	2	100.0	0	Doubtful
+1.13.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295	0				100.0	Doubtful
+1.13.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295	0				100.0	Doubtful
+1.14	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.13.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295	0				100.0	Doubtful
-2.13.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295	0				100.0	Doubtful
-2.14	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK				2	2	100.0	0	Doubtful
+1.14.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305	0				100.0	Doubtful
+1.14.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305	0				100.0	Doubtful
+1.15	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID				4	4	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.14.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305	0				100.0	Doubtful
-2.14.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305	0				100.0	Doubtful
-2.15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID				4	4	100.0	0	Doubtful
+1.15.1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237	0				100.0	Doubtful
+1.15.2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827	0				100.0	Doubtful
+1.15.3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237	0				100.0	Doubtful
+1.15.4	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827	0				100.0	Doubtful
+2	cds.comp52727_c0_seq1	m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91	69.96963713242043	100.0	3.25	0.0032520325203252032					Related Proteins	cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	1	1	1	2	2	100.0	0	Doubtful
+	Protein(s)	Sequence	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	#Validated PSMs	#PSMs	Confidence [%]	Decoy	Validation
+2.1	cds.comp52727_c0_seq1; cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ				2	2	100.0	0	Doubtful
 	Protein(s)	Sequence	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Decoy	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-2.15.1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237	0				100.0	Doubtful
-2.15.2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827	0				100.0	Doubtful
-2.15.3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237	0				100.0	Doubtful
-2.15.4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827	0				100.0	Doubtful
+2.1.1	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747	0				100.0	Doubtful
+2.1.2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747	0				100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_peptides_phoshorylation_result2.tabular
--- a/test-data/peptide_shaker_peptides_phoshorylation_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_peptides_phoshorylation_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,17 +1,17 @@
 	Protein(s)	Protein Group(s)	#Validated Protein Group(s)	Unique Database	Sequence	Modified Sequence	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	Confident Phosphosites	#Confident Phosphosites	Ambiguous Phosphosites	#Ambiguous Phosphosites	#Validated PSMs	#PSMs	Confidence [%]	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH	SK; SK; SK	SK; SK; SK								2	2	100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	YESQLSQIR	NH2-YESQLSQIR-COOH	AR; AR	QS; QS								2	2	100.0	Doubtful
-3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH	RR; RR	AS; AS								2	2	100.0	Doubtful
-4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH	RR; RR	NL; NL								2	2	100.0	Doubtful
-5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH	LK; LK	IN; IN								2	2	100.0	Doubtful
-6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH	NR; NR	SE; SE								4	4	100.0	Doubtful
-7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH	GR; GR	DM; DM								2	2	100.0	Doubtful
-8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	LISATSISPEHK	NH2-LISATSISPEHK-COOH	DR; DR; DR	ID; ID; ID								4	4	100.0	Doubtful
-9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH	NK; NK	LS; LS								4	4	100.0	Doubtful
-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH	AK; AK	IS; IS								4	4	100.0	Doubtful
-11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SLQAENEQLR	NH2-SLQAENEQLR-COOH	VR; VR	LK; LK								2	2	100.0	Doubtful
-12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH	AK; AK; AK	NS; NS; NS								2	2	100.0	Doubtful
-13	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH	MK; MK	SN; SN								2	2	100.0	Doubtful
-14	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 (Doubtful)	1	1	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH	MR; MR	YQ; YQ								2	2	100.0	Doubtful
-15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH	QK; QK	SV; SV								4	4	100.0	Doubtful
-16	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH	AR; AR	LI; LI								2	2	100.0	Doubtful
+1	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH	SK; SK; SK	SK; SK; SK								2	2	100.0	Doubtful
+2	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	YESQLSQIR	NH2-YESQLSQIR-COOH	AR; AR	QS; QS								2	2	100.0	Doubtful
+3	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH	RR; RR	AS; AS								2	2	100.0	Doubtful
+4	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH	RR; RR	NL; NL								2	2	100.0	Doubtful
+5	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH	LK; LK	IN; IN								2	2	100.0	Doubtful
+6	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH	NR; NR	SE; SE								4	4	100.0	Doubtful
+7	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH	GR; GR	DM; DM								2	2	100.0	Doubtful
+8	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LISATSISPEHK	NH2-LISATSISPEHK-COOH	DR; DR; DR	ID; ID; ID								4	4	100.0	Doubtful
+9	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH	NK; NK	LS; LS								4	4	100.0	Doubtful
+10	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH	AK; AK	IS; IS								4	4	100.0	Doubtful
+11	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SLQAENEQLR	NH2-SLQAENEQLR-COOH	VR; VR	LK; LK								2	2	100.0	Doubtful
+12	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH	AK; AK; AK	NS; NS; NS								2	2	100.0	Doubtful
+13	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH	MK; MK	SN; SN								2	2	100.0	Doubtful
+14	cds.comp52727_c0_seq1; cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 (Doubtful)	1	1	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH	MR; MR	YQ; YQ								2	2	100.0	Doubtful
+15	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH	QK; QK	SV; SV								4	4	100.0	Doubtful
+16	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH	AR; AR	LI; LI								2	2	100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_peptides_result2.tabular
--- a/test-data/peptide_shaker_peptides_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_peptides_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,17 +1,17 @@
 	Protein(s)	Protein Group(s)	#Validated Protein Group(s)	Unique Database	Sequence	Modified Sequence	Position	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	#Validated PSMs	#PSMs	Confidence [%]	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH	511; 504; 29	SK; SK; SK	SK; SK; SK				2	2	100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	YESQLSQIR	NH2-YESQLSQIR-COOH	323; 323	AR; AR	QS; QS				2	2	100.0	Doubtful
-3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH	37; 37	RR; RR	AS; AS				2	2	100.0	Doubtful
-4	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH	128; 128	RR; RR	NL; NL				2	2	100.0	Doubtful
-5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH	161; 161	LK; LK	IN; IN				2	2	100.0	Doubtful
-6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH	442; 442	NR; NR	SE; SE				4	4	100.0	Doubtful
-7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH	63; 63	GR; GR	DM; DM				2	2	100.0	Doubtful
-8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	LISATSISPEHK	NH2-LISATSISPEHK-COOH	549; 542; 67	DR; DR; DR	ID; ID; ID				4	4	100.0	Doubtful
-9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH	403; 403	NK; NK	LS; LS				4	4	100.0	Doubtful
-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH	147; 147	AK; AK	IS; IS				4	4	100.0	Doubtful
-11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	SLQAENEQLR	NH2-SLQAENEQLR-COOH	110; 110	VR; VR	LK; LK				2	2	100.0	Doubtful
-12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67; cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH	590; 583; 108	AK; AK; AK	NS; NS; NS				2	2	100.0	Doubtful
-13	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH	373; 373	MK; MK	SN; SN				2	2	100.0	Doubtful
-14	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91; cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92 (Doubtful)	1	1	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH	298; 298	MR; MR	YQ; YQ				2	2	100.0	Doubtful
-15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH	254; 254	QK; QK	SV; SV				4	4	100.0	Doubtful
-16	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67; cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67 (Doubtful)	1	1	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH	179; 179	AR; AR	LI; LI				2	2	100.0	Doubtful
+1	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH	511; 504; 29	SK; SK; SK	SK; SK; SK				2	2	100.0	Doubtful
+2	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	YESQLSQIR	NH2-YESQLSQIR-COOH	323; 323	AR; AR	QS; QS				2	2	100.0	Doubtful
+3	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH	37; 37	RR; RR	AS; AS				2	2	100.0	Doubtful
+4	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH	128; 128	RR; RR	NL; NL				2	2	100.0	Doubtful
+5	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH	161; 161	LK; LK	IN; IN				2	2	100.0	Doubtful
+6	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH	442; 442	NR; NR	SE; SE				4	4	100.0	Doubtful
+7	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH	63; 63	GR; GR	DM; DM				2	2	100.0	Doubtful
+8	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LISATSISPEHK	NH2-LISATSISPEHK-COOH	549; 542; 67	DR; DR; DR	ID; ID; ID				4	4	100.0	Doubtful
+9	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH	403; 403	NK; NK	LS; LS				4	4	100.0	Doubtful
+10	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH	147; 147	AK; AK	IS; IS				4	4	100.0	Doubtful
+11	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SLQAENEQLR	NH2-SLQAENEQLR-COOH	110; 110	VR; VR	LK; LK				2	2	100.0	Doubtful
+12	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH	590; 583; 108	AK; AK; AK	NS; NS; NS				2	2	100.0	Doubtful
+13	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH	373; 373	MK; MK	SN; SN				2	2	100.0	Doubtful
+14	cds.comp52727_c0_seq1; cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 (Doubtful)	1	1	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH	298; 298	MR; MR	YQ; YQ				2	2	100.0	Doubtful
+15	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH	254; 254	QK; QK	SV; SV				4	4	100.0	Doubtful
+16	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH	179; 179	AR; AR	LI; LI				2	2	100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_proteins_phoshorylation_result2.tabular
--- a/test-data/peptide_shaker_proteins_phoshorylation_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_proteins_phoshorylation_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,3 +1,3 @@
-	Main Accession	Description	Gene Name	Chromosome	MW [kDa]	Possible Coverage [%]	Coverage [%]	Spectrum Counting NSAF 	Confident Phosphosites	#Confident Phosphosites	Ambiguous Phosphosites	#Ambiguous Phosphosites	PI	Secondary Accessions	Protein Group	#Validated Peptides	#Peptides	#Unique	#Validated PSMs	#PSMs	Confidence	Decoy	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67				69.88215372568374	92.52	37.58	0.01785479771710408		0		0	Related Proteins	cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	15	15	15	40	40	100.0	0	Doubtful
-2	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91				69.9696370486838	100.0	3.25	0.0032520325203252032		0		0	Related Proteins	cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	1	1	1	2	2	100.0	0	Doubtful
+	Main Accession	Description	Gene Name	Chromosome	MW [kDa]	Possible Coverage [%]	Coverage [%]	Spectrum Counting NSAF	Confident Phosphosites	#Confident Phosphosites	Ambiguous Phosphosites	#Ambiguous Phosphosites	Protein Inference	Secondary Accessions	Protein Group	#Validated Peptides	#Peptides	#Unique	#Validated Unique	#Unique to Group	#Validated Unique to Group	#Validated PSMs	#PSMs	Confidence [%]	Validation
+1	cds.comp41779_c0_seq1	m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67			69.88215380565927	92.52	37.58	0.017651472642866785		0		0	Related Proteins	cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	15	15	15	15	15	15	40	40	100.0	Doubtful
+2	cds.comp52727_c0_seq1	m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91			69.96963713242043	100.0	3.25	0.0032520325203252032		0		0	Related Proteins	cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	1	1	1	1	1	1	2	2	100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_proteins_result2.tabular
--- a/test-data/peptide_shaker_proteins_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_proteins_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,3 +1,3 @@
 	Main Accession	Description	Gene Name	Chromosome	MW [kDa]	Possible Coverage [%]	Coverage [%]	Spectrum Counting	Confidently Localized Modification Sites	# Confidently Localized Modification Sites	Ambiguously Localized Modification Sites	#Ambiguously Localized Modification Sites	Protein Inference	Secondary Accessions	Protein Group	#Validated Peptides	#Peptides	#Unique	#Validated Unique	#Unique to Group	#Validated Unique to Group	#Validated PSMs	#PSMs	Confidence [%]	Validation
-1	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91				69.96963713242043	100.0	3.25	4451.587393160344					Related Proteins	cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	1	1	1	1	1	1	2	2	100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67				69.88215380565927	92.52	37.58	24162.449974467898					Related Proteins	cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	15	15	15	15	15	15	40	40	100.0	Doubtful
+1	cds.comp41779_c0_seq1	m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67			69.88215380565927	92.52	37.58	24162.449974467898					Related Proteins	cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	15	15	15	15	15	15	40	40	100.0	Doubtful
+2	cds.comp52727_c0_seq1	m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91			69.96963713242043	100.0	3.25	4451.587393160344					Related Proteins	cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	1	1	1	1	1	1	2	2	100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_psm_phoshorylation_result2.tabular
--- a/test-data/peptide_shaker_psm_phoshorylation_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_psm_phoshorylation_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,43 +1,43 @@
 	Protein(s)	Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Localization Confidence	Probabilistic PTM score	D-score	Confident Phosphosites	#Confident Phosphosites	Ambiguous Phosphosites	#Ambiguous Phosphosites	Confidence [%]	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939								100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501								100.0	Doubtful
-3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245								100.0	Doubtful
-4	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747								100.0	Doubtful
-5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939								100.0	Doubtful
-6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245								100.0	Doubtful
-7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501								100.0	Doubtful
-8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349								100.0	Doubtful
-9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787								100.0	Doubtful
-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223								100.0	Doubtful
-11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312								100.0	Doubtful
-12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787								100.0	Doubtful
-13	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747								100.0	Doubtful
-14	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406								100.0	Doubtful
-15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312								100.0	Doubtful
-16	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223								100.0	Doubtful
-17	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364								100.0	Doubtful
-18	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754								100.0	Doubtful
-19	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237								100.0	Doubtful
-20	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827								100.0	Doubtful
-21	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069								100.0	Doubtful
-22	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349								100.0	Doubtful
-23	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375								100.0	Doubtful
-24	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295								100.0	Doubtful
-25	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305								100.0	Doubtful
-26	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237								100.0	Doubtful
-27	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653								100.0	Doubtful
-28	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883								100.0	Doubtful
-29	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653								100.0	Doubtful
-30	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754								100.0	Doubtful
-31	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295								100.0	Doubtful
-32	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375								100.0	Doubtful
-33	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305								100.0	Doubtful
-34	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005								100.0	Doubtful
-35	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414								100.0	Doubtful
-36	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364								100.0	Doubtful
-37	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005								100.0	Doubtful
-38	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406								100.0	Doubtful
-39	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069								100.0	Doubtful
-40	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827								100.0	Doubtful
-41	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883								100.0	Doubtful
-42	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414								100.0	Doubtful
+1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939								100.0	Doubtful
+2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501								100.0	Doubtful
+3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245								100.0	Doubtful
+4	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747								100.0	Doubtful
+5	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939								100.0	Doubtful
+6	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245								100.0	Doubtful
+7	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501								100.0	Doubtful
+8	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349								100.0	Doubtful
+9	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787								100.0	Doubtful
+10	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223								100.0	Doubtful
+11	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312								100.0	Doubtful
+12	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787								100.0	Doubtful
+13	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747								100.0	Doubtful
+14	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406								100.0	Doubtful
+15	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312								100.0	Doubtful
+16	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223								100.0	Doubtful
+17	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364								100.0	Doubtful
+18	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754								100.0	Doubtful
+19	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237								100.0	Doubtful
+20	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827								100.0	Doubtful
+21	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069								100.0	Doubtful
+22	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349								100.0	Doubtful
+23	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375								100.0	Doubtful
+24	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295								100.0	Doubtful
+25	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305								100.0	Doubtful
+26	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237								100.0	Doubtful
+27	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653								100.0	Doubtful
+28	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883								100.0	Doubtful
+29	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653								100.0	Doubtful
+30	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754								100.0	Doubtful
+31	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295								100.0	Doubtful
+32	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375								100.0	Doubtful
+33	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305								100.0	Doubtful
+34	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005								100.0	Doubtful
+35	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414								100.0	Doubtful
+36	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364								100.0	Doubtful
+37	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005								100.0	Doubtful
+38	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406								100.0	Doubtful
+39	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069								100.0	Doubtful
+40	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827								100.0	Doubtful
+41	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883								100.0	Doubtful
+42	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414								100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_psm_result1.tabular
--- a/test-data/peptide_shaker_psm_result1.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_psm_result1.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,43 +1,43 @@
 	Protein(s)	Sequence	AAs Before	AAs After	Position	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
-3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
-4	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
-5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
-6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
-7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
-8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
-9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
-11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
-12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
-13	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
-14	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
-15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
-16	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
-17	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
-18	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
-19	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
-20	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
-21	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
-22	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
-23	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
-24	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
-25	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
-26	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
-27	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
-28	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
-29	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
-30	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
-31	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
-32	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
-33	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
-34	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
-35	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
-36	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
-37	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
-38	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
-39	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
-40	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
-41	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
-42	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
+1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
+2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
+3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
+4	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
+5	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
+6	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
+7	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
+8	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
+9	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
+10	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
+11	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
+12	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
+13	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
+14	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
+15	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
+16	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
+17	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
+18	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
+19	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
+20	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
+21	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
+22	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
+23	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
+24	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
+25	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
+26	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
+27	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
+28	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
+29	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
+30	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
+31	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
+32	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
+33	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
+34	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
+35	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
+36	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
+37	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
+38	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
+39	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
+40	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
+41	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
+42	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_psm_result2.tabular
--- a/test-data/peptide_shaker_psm_result2.tabular	Fri Jan 13 10:16:20 2017 -0500
+++ b/test-data/peptide_shaker_psm_result2.tabular	Fri Jan 13 14:15:29 2017 -0500
@@ -1,43 +1,43 @@
 	Protein(s)	Sequence	AAs Before	AAs After	Position	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
-1	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
-2	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
-3	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
-4	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
-5	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
-6	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
-7	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
-8	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
-9	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
-10	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
-11	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
-12	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
-13	cds.comp52727_c0_seq1|m.18670 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 34.52 EValue:1.0e-91, cds.comp52727_c0_seq2|m.18672 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 35.0 EValue:3.0e-92	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
-14	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
-15	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
-16	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
-17	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
-18	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
-19	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
-20	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
-21	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
-22	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
-23	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
-24	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
-25	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
-26	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
-27	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
-28	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
-29	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
-30	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
-31	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
-32	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
-33	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
-34	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
-35	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
-36	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
-37	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
-38	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
-39	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
-40	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67, cds.comp41779_c0_seq3|m.9435 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 31.94 EValue:4.0e-10	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
-41	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
-42	cds.comp41779_c0_seq1|m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67, cds.comp41779_c0_seq2|m.9432 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.75 EValue:3.0e-67	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
+1	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198, +MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
+2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207,  MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
+3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636,  MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
+4	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748, +MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
+5	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1198,  MSn(1139.0413), 115.6 min		-1.0	1139.04127	2+	2+	2276.05608409959	0	5.225020941968939				100.0	Doubtful
+6	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	MEIITITNQLQR	MK; MK	SN; SN	373; 373	NH2-MEIITITNQLQR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 636, +MSn(730.3981), 66.9 min		-1.0	730.39814	2+	2+	1458.7864490053003	0	-3.232431329032245				100.0	Doubtful
+7	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 207, +MSn(785.9179), 35.7 min		-1.0	785.91791	2+	2+	1569.8362356486905	0	-9.522902824571501				100.0	Doubtful
+8	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220,  MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
+9	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736,  MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
+10	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81,  MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
+11	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875, +MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
+12	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	EFDVEPLKEAYQAEIDEAK	RR; RR	NL; NL	128; 128	NH2-EFDVEPLKEAYQAEIDEAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 736, +MSn(742.0258), 75.1 min		-1.0	742.02585	3+	3+	2223.05830922026	0	-1.1628605149493787				100.0	Doubtful
+13	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2	EIRDEYDNQLNLLSADLESK	MR; MR	YQ; YQ	298; 298	NH2-EIRDEYDNQLNLLSADLESK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 748,  MSn(789.0604), 76.1 min		-1.0	789.06034	3+	3+	2364.1444984557097	0	6.206637734347747				100.0	Doubtful
+14	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357,  MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
+15	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 875,  MSn(483.2538), 89.2 min		-1.0	483.25374	3+	3+	1446.7354589782603	0	2.711916908512312				100.0	Doubtful
+16	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	INEDRIDELQDKVNK	AR; AR	LI; LI	179; 179	NH2-INEDRIDELQDKVNK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 81, +MSn(610.3171), 27.0 min		-1.0	610.31708	3+	3+	1827.9326552146704	0	-1.7720894394949223				100.0	Doubtful
+17	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197,  MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
+18	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871,  MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
+19	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75,  MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
+20	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72,  MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
+21	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204,  MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
+22	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SHVVGAGLGGGSMGSMNQSMSLHGGR	RR; RR	AS; AS	37; 37	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 220, +MSn(824.3852), 36.3 min		-1.0	824.38516	3+	3+	2470.1263804604496	0	2.939629370057349				100.0	Doubtful
+23	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588,  MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
+24	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582,  MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
+25	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758, +MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
+26	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 75, +MSn(641.8547), 26.7 min		-1.0	641.85466	2+	2+	1281.6928658902905	0	1.4810042052113237				100.0	Doubtful
+27	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67,  MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
+28	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39,  MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
+29	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	YESQLSQIR	AR; AR	QS; QS	323; 323	NH2-YESQLSQIR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 67, +MSn(562.2947), 26.3 min		-1.0	562.29468	2+	2+	1122.5669371011802	0	6.998127984108653				100.0	Doubtful
+30	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	VGNLEEELEFLR	QK; QK	SV; SV	254; 254	NH2-VGNLEEELEFLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 871, +MSn(724.3762), 88.9 min		-1.0	724.37624	2+	2+	1446.7354589782603	0	1.7035983403308754				100.0	Doubtful
+31	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	KGDIIATVDEWGPVNR	AK; AK; AK	NS; NS; NS	590; 583; 108	NH2-KGDIIATVDEWGPVNR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 582, +MSn(590.6452), 63.2 min		-1.0	590.64518	3+	3+	1768.9107975712802	0	1.6439836590138295				100.0	Doubtful
+32	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 588, +MSn(764.3961), 63.5 min		-1.0	764.39611	2+	2+	1526.7729071161402	0	3.1135461012602375				100.0	Doubtful
+33	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	SVISIGEVESEGQYVTLENTSSGR	SK; SK; SK	SK; SK; SK	511; 504; 29	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 758,  MSn(847.7508), 76.8 min		-1.0	847.75082	3+	3+	2540.2242053283903	0	2.5264056585684305				100.0	Doubtful
+34	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752, +MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
+35	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591,  MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
+36	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	LHVEMESMIEELQMLMDAK	NK; NK	LS; LS	403; 403	NH2-LHVEMESMIEELQMLMDAK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 1197, +MSn(759.6966), 115.6 min		-1.0	759.69661	3+	3+	2276.05608409959	0	5.2286496671522364				100.0	Doubtful
+37	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISITTYEEEIEDLHATAR	LK; LK	IN; IN	161; 161	NH2-ISITTYEEEIEDLHATAR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 752,  MSn(697.6842), 76.3 min		-1.0	697.68418	3+	3+	2090.0167787614505	0	6.6562738302421005				100.0	Doubtful
+38	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ASLGMAAGVAGGIATK	GR; GR	DM; DM	63; 63	NH2-ASLGMAAGVAGGIATK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 357, +MSn(687.8723), 46.6 min		-1.0	687.87224	2+	2+	1373.7336851564505	0	-2.731669916283406				100.0	Doubtful
+39	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	NLLLDANKENGELK	AK; AK	IS; IS	147; 147	NH2-NLLLDANKENGELK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 204, +MSn(524.2825), 35.5 min		-1.0	524.28252	3+	3+	1569.8362356486905	0	-6.678955564950069				100.0	Doubtful
+40	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2, cds.comp41779_c0_seq3	LISATSISPEHK	DR; DR; DR	ID; ID; ID	549; 542; 67	NH2-LISATSISPEHK-COOH			searchgui_tinyspectra1.mgf	 Cmpd 72, +MSn(428.2391), 26.6 min		-1.0	428.23909	3+	3+	1281.6928658902905	0	2.0041097707959827				100.0	Doubtful
+41	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	SLQAENEQLR	VR; VR	LK; LK	110; 110	NH2-SLQAENEQLR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 39, +MSn(594.3056), 25.0 min		-1.0	594.30561	2+	2+	1186.5942144781802	0	2.0634108237361883				100.0	Doubtful
+42	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2	ISTGYITENIGGFR	NR; NR	SE; SE	442; 442	NH2-ISTGYITENIGGFR-COOH			searchgui_tinyspectra1.mgf	 Cmpd 591, +MSn(509.9328), 63.7 min		-1.0	509.93283	3+	3+	1526.7729071161402	0	2.4535863107993414				100.0	Doubtful
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/peptide_shaker_result1.zip
Binary file test-data/peptide_shaker_result1.zip has changed
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/tiny_searchgui_result1.zip
Binary file test-data/tiny_searchgui_result1.zip has changed
diff -r ef4ac2d49ff0 -r 2375ad43661f test-data/tiny_searchgui_result_amandaonly.zip
Binary file test-data/tiny_searchgui_result_amandaonly.zip has changed