Mercurial > repos > galaxyp > peptideshaker
diff admin_scripts/build_mods_loc.py @ 0:a9e90cdcb97a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit ceaef1a06c8600f9a042fc8f80f5b3fae75d4445-dirty
author | galaxyp |
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date | Sat, 30 May 2015 05:25:00 -0400 |
parents | |
children | b72821cab1d7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/admin_scripts/build_mods_loc.py Sat May 30 05:25:00 2015 -0400 @@ -0,0 +1,12 @@ +#!/usr/bin/env python + +import xml.etree.ElementTree as ET +from os.path import exists + +with open("searchgui_mods.loc.sample", "w") as output: + for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: + tree = ET.parse(mods_path) + modifications_el = tree.getroot() + for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): + name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") + output.write("%s\n" % name_el.text.lower())