diff searchgui.xml @ 11:76d14dc397ed draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 327a3944f2f56668d607c3d6cb08ae7d588e208c

--- a/searchgui.xml	Mon Jun 08 19:54:30 2015 -0400
+++ b/searchgui.xml	Tue Jun 16 23:43:15 2015 -0400
@@ -874,7 +874,7 @@
     </outputs>
     <tests>
 
-        <!-- Test that specifying non-default search engines -->
+        <!-- Test that specifying non-default search engines works -->
         <test>
             <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/>
             <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/>
@@ -889,6 +889,22 @@
 
             <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> 
         </test>
+
+        <!-- Test that search works with MSAmanda -->
+        <test>
+            <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/>
+            <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/>
+            <param name="precursor_ion_tol" value="100"/>
+            <param name="fixed_modifications" value="carbamidomethyl c"/>
+            <param name="variable_modifications" value="oxidation of m"/>
+            <param name="min_charge" value="1"/>
+            <param name="max_charge" value="3"/>
+            <param name="engines" value="MS_Amanda"/>
+
+            <output name="output" file="tiny_searchgui_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> 
+        </test>
+
+
     </tests>
     <help>
 **What it does**