Mercurial > repos > galaxyp > peptideshaker
comparison fasta_cli.xml @ 54:f5236b38562c draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit fc2810c412d9954fa584ae74497562b986c52764"
| author | galaxyp |
|---|---|
| date | Thu, 12 Aug 2021 14:06:16 +0000 |
| parents | c506a7ccb856 |
| children |
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| 53:166173739c8d | 54:f5236b38562c |
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| 44 <param format="fasta" name="input_database" type="data" label="Protein Database" | 44 <param format="fasta" name="input_database" type="data" label="Protein Database" |
| 45 help="Select FASTA database from history"/> | 45 help="Select FASTA database from history"/> |
| 46 | 46 |
| 47 <section name="database_processing_options" expanded="true" title="Database Processing Options"> | 47 <section name="database_processing_options" expanded="true" title="Database Processing Options"> |
| 48 | 48 |
| 49 <param name="decoy_tag" type="text" value="-REVERSED" label="The decoy flag"> | 49 <param name="decoy_tag" type="text" value="_REVERSED" label="The decoy flag"> |
| 50 </param> | 50 </param> |
| 51 <param name="decoy_type" type="select" label="Location of the decoy flag: prefix or suffix"> | 51 <param name="decoy_type" type="select" label="Location of the decoy flag: prefix or suffix"> |
| 52 <option value="1">Prefix</option> | 52 <option value="1">Prefix</option> |
| 53 <option value="2" selected="True">Suffix</option> | 53 <option value="2" selected="True">Suffix</option> |
| 54 </param> | 54 </param> |
| 72 <help> | 72 <help> |
| 73 **What it does** | 73 **What it does** |
| 74 | 74 |
| 75 Appends decoy sequences to FASTA files. Default format is adequated to be used by SearchGUI and PeptideShaker tools, ie: | 75 Appends decoy sequences to FASTA files. Default format is adequated to be used by SearchGUI and PeptideShaker tools, ie: |
| 76 | 76 |
| 77 * Decoy flag: -REVERSED | 77 * Decoy flag: _REVERSED |
| 78 | 78 |
| 79 * Location: suffix | 79 * Location: suffix |
| 80 | 80 |
| 81 * Target decoy suffix: _concatenated_target_decoy | 81 * Target decoy suffix: _concatenated_target_decoy |
| 82 | 82 |