Mercurial > repos > galaxyp > peptideshaker
comparison searchgui.xml @ 20:2375ad43661f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit bdb5ee12705a3494eee96d1963f16f68bbe41d5c
| author | galaxyp |
|---|---|
| date | Fri, 13 Jan 2017 14:15:29 -0500 |
| parents | ef4ac2d49ff0 |
| children | 515c835c2f07 |
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| 19:ef4ac2d49ff0 | 20:2375ad43661f |
|---|---|
| 1098 <param name="max_charge" value="3"/> | 1098 <param name="max_charge" value="3"/> |
| 1099 <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/> | 1099 <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/> |
| 1100 <param name="xtandem.xtandem_advanced" value="yes"/> | 1100 <param name="xtandem.xtandem_advanced" value="yes"/> |
| 1101 <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/> | 1101 <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/> |
| 1102 | 1102 |
| 1103 <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> | 1103 <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" /> |
| 1104 </test> | 1104 </test> |
| 1105 <!-- Test that search works with MSAmanda --> | 1105 <!-- Test that search works with MSAmanda --> |
| 1106 <test> | 1106 <test> |
| 1107 <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/> | 1107 <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/> |
| 1108 <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/> | 1108 <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/> |
| 1111 <param name="variable_modifications" value="oxidation of m"/> | 1111 <param name="variable_modifications" value="oxidation of m"/> |
| 1112 <param name="min_charge" value="1"/> | 1112 <param name="min_charge" value="1"/> |
| 1113 <param name="max_charge" value="3"/> | 1113 <param name="max_charge" value="3"/> |
| 1114 <param name="engines" value="MS_Amanda"/> | 1114 <param name="engines" value="MS_Amanda"/> |
| 1115 | 1115 |
| 1116 <output name="output" file="tiny_searchgui_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> | 1116 <output name="output" file="tiny_searchgui_result_amandaonly.zip" ftype="searchgui_archive" compare="sim_size" delta="5000" /> |
| 1117 </test> | 1117 </test> |
| 1118 </tests> | 1118 </tests> |
| 1119 <help> | 1119 <help> |
| 1120 **What it does** | 1120 **What it does** |
| 1121 | 1121 |