Mercurial > repos > galaxyp > package_peptideshaker_1_1

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
author galaxyp
date Sun, 21 Feb 2016 11:09:31 -0500
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a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
galaxyp
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1 <?xml version="1.0"?>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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2 <tool_dependency>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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3 <package name="peptide_shaker" version="1.1">
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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4 <install version="1.0">
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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5 <actions>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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6 <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/1.1.3/PeptideShaker-1.1.3.zip</action>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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7 <action type="move_directory_files">
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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8 <source_directory>../PeptideShaker-1.1.3</source_directory>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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9 <destination_directory>$INSTALL_DIR/</destination_directory>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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10 </action>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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11 <action type="set_environment">
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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13 <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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14 <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-1.1.3.jar</environment_variable>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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15 </action>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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16 </actions>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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17 </install>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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18 <readme>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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19 Install Galaxy package application for PeptideShaker 1.1
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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20 http://peptide-shaker.googlecode.com
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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21
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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22 NOTE: Installation from Galaxy requires release v15.10
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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23 or requires commits :
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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24 - https://github.com/galaxyproject/galaxy/commit/197c7b21b209a7b6fbdb9a8a11c232a2b88523fc#diff-f304e7b7451d47608f7ded8f2b9c16d2
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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25 </readme>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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26 </package>
a639559a8e83 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/packages/package_peptideshaker_1_1 commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
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27 </tool_dependency>