Mercurial > repos > galaxyp > package_morpheus_255
changeset 0:dd908e7d97a7 draft default tip
planemo upload commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Tue, 14 May 2019 17:20:44 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 14 17:20:44 2019 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0" ?> +<tool_dependency> + <package name="mono" version="4.0"> + <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"/> + </package> + <package name="morpheus" version="255"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://github.com/cwenger/Morpheus/releases/download/r255/Morpheus_mzML_Mono.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="mono" version="4.0"/> + </repository> + </action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable> + <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable> + </action> + </actions> + </install> + <readme> + Install Galaxy package application for Morpheus release 255 for use on linux + Must be executed with mono: + mono ${MORPHEUS_PATH}/morpheus_mzml_mono_cl.exe -d input.mzML -db searchDB.fasta + https://github.com/cwenger/Morpheus/ + </readme> + </package> +</tool_dependency> \ No newline at end of file