Mercurial > repos > galaxyp > package_morpheus_255

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author galaxyp
date Tue, 14 May 2019 17:20:44 -0400
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1 <?xml version="1.0" ?>
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2 <tool_dependency>
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3 <package name="mono" version="4.0">
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4 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
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5 </package>
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6 <package name="morpheus" version="255">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://github.com/cwenger/Morpheus/releases/download/r255/Morpheus_mzML_Mono.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="mono" version="4.0"/>
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13 </repository>
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14 </action>
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15 <action type="move_directory_files">
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16 <source_directory>.</source_directory>
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17 <destination_directory>$INSTALL_DIR/</destination_directory>
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18 </action>
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19 <action type="set_environment">
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20 <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable>
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21 <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable>
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22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable>
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23 <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 Install Galaxy package application for Morpheus release 255 for use on linux
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29 Must be executed with mono:
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30 mono ${MORPHEUS_PATH}/morpheus_mzml_mono_cl.exe -d input.mzML -db searchDB.fasta
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31 https://github.com/cwenger/Morpheus/
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32 </readme>
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33 </package>
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34 </tool_dependency>