Mercurial > repos > galaxyp > package_morpheus_165

changeset 0:bc33157dced3 draft default tip

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author galaxyp
date Thu, 22 Oct 2015 13:37:57 -0400
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children
files tool_dependencies.xml
diffstat 1 files changed, 34 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 22 13:37:57 2015 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="mono" version="4.0">
+       <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="morpheus" version="165">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/morpheus-ms/files/revision%20165/Morpheus%20%28Linux%29.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="mono" version="4.0" />
+                    </repository>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="MORPHEUS_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable>
+                    <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Install Galaxy package application for Morpheus release 165 for use on linux 
+            Must be executed with mono:
+            mono ${MORPHEUS_ROOT_PATH}/morpheus_cl.exe -d input.mzML -db searchDB.fasta
+            http://morpheus-ms.sourceforge.net/
+        </readme>
+    </package>
+</tool_dependency>