# HG changeset patch
# User galaxyp
# Date 1492545400 14400
# Node ID 7cca7b7dc08ed841e8802a8fa68c743ca65aa33b
# Parent  8c5c2b084e44e67c4a54864f7102cf2ab415d1cf
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb

diff -r 8c5c2b084e44 -r 7cca7b7dc08e TextExporter.xml
--- a/TextExporter.xml	Wed Mar 01 10:16:43 2017 -0500
+++ b/TextExporter.xml	Tue Apr 18 15:56:40 2017 -0400
@@ -25,7 +25,12 @@
   -replacement     "$param_replacement"
 #end if
 #if $param_quoting:
-  -quoting $param_quoting
+  -quoting
+  #if " " in str($param_quoting):
+    "$param_quoting"
+  #else
+    $param_quoting
+  #end if
 #end if
 #if $param_no_ids:
   -no_ids
@@ -61,7 +66,12 @@
   -consensus:features $param_consensus_features
 #end if
 #if $param_consensus_sorting_method:
-  -consensus:sorting_method $param_consensus_sorting_method
+  -consensus:sorting_method
+  #if " " in str($param_consensus_sorting_method):
+    "$param_consensus_sorting_method"
+  #else
+    $param_consensus_sorting_method
+  #end if
 #end if
 #if $param_consensus_sort_by_maps:
   -consensus:sort_by_maps
diff -r 8c5c2b084e44 -r 7cca7b7dc08e readme.md
--- a/readme.md	Wed Mar 01 10:16:43 2017 -0500
+++ b/readme.md	Tue Apr 18 15:56:40 2017 -0400
@@ -39,10 +39,10 @@
  * clone or install CTD2Galaxy
 
     ```bash
-    git clone https://github.com/blankclemens/CTD2Galaxy.git
+    git clone https://github.com/WorkflowConversion/CTD2Galaxy.git
     ```
     
- * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. 
+ * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. The default files are provided in this repository.
 
     ```bash
     python generator.py \ 
@@ -102,13 +102,6 @@
     [...]
     ]]>
     ```
- * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line
- 
-        -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit
-     
-   and change it to
-   
-        -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit"
 
  * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: