diff SvmTheoreticalSpectrumGeneratorTrainer.xml @ 9:fb26ce877bbe draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/SvmTheoreticalSpectrumGeneratorTrainer.xml	Mon Feb 12 08:51:42 2018 -0500
+++ b/SvmTheoreticalSpectrumGeneratorTrainer.xml	Wed May 15 05:58:29 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.2.0">
+<tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.3.0">
   <description>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator</description>
   <macros>
     <token name="@EXECUTABLE@">SvmTheoreticalSpectrumGeneratorTrainer</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SvmTheoreticalSpectrumGeneratorTrainer
+  <command detect_errors="aggressive"><![CDATA[SvmTheoreticalSpectrumGeneratorTrainer
 
 #if $param_in_spectra:
   -in_spectra $param_in_spectra
@@ -232,7 +232,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in_spectra" type="data" format="mzml" optional="False" label="Input Training Spectra in mzML" help="(-in_spectra) "/>
     <param name="param_in_identifications" type="data" format="idxml" optional="False" label="Input file with corresponding sequences in idXML" help="(-in_identifications) "/>
@@ -320,5 +320,5 @@
   <help>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SvmTheoreticalSpectrumGeneratorTrainer.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SvmTheoreticalSpectrumGeneratorTrainer.html</help>
 </tool>