# HG changeset patch
# User galaxyp
# Date 1502281880 14400
# Node ID caf306f538541b6de5c53479be87d8a221366240
# Parent  bd6bfbd4cfe55ec87688d7036cdc2a944ec30453
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14

diff -r bd6bfbd4cfe5 -r caf306f53854 SpectraSTSearchAdapter.xml
--- a/SpectraSTSearchAdapter.xml	Mon Aug 07 14:58:25 2017 -0400
+++ b/SpectraSTSearchAdapter.xml	Wed Aug 09 08:31:20 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="SpectraSTSearchAdapter" name="SpectraSTSearchAdapter" version="2.2.0">
+<tool id="SpectraSTSearchAdapter" name="SpectraSTSearchAdapter" version="2.2.0.1">
   <description>Interface to the SEARCH Mode of the SpectraST executable</description>
   <macros>
     <token name="@EXECUTABLE@">SpectraSTSearchAdapter</token>
@@ -86,7 +86,7 @@
     <expand macro="advanced_options">
       <param name="param_use_isotopically_averaged_mass" display="radio" type="boolean" truevalue="-use_isotopically_averaged_mass" falsevalue="" checked="false" optional="True" label="Use isotopically averaged mass instead of monoisotopic mass" help="(-use_isotopically_averaged_mass) "/>
       <param name="param_use_all_charge_states" display="radio" type="boolean" truevalue="-use_all_charge_states" falsevalue="" checked="false" optional="True" label="Search library spectra of all charge states, i.e., ignore specified charge state (if any) of the query spectrum" help="(-use_all_charge_states) "/>
-      <param name="param_user_mod_file" type="data" format="text" label="Specify name of user-defined modifications file" help="(-user_mod_file) Default is &quot;spectrast.usermods&quot;"/>
+      <param name="param_user_mod_file" type="data" format="txt" label="Specify name of user-defined modifications file" help="(-user_mod_file) Default is &quot;spectrast.usermods&quot;"/>
       <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
     </expand>
   </inputs>