diff SpectraMerger.xml @ 9:42c060691e83 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/SpectraMerger.xml	Mon Feb 12 08:58:43 2018 -0500
+++ b/SpectraMerger.xml	Wed May 15 06:52:21 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
-<tool id="SpectraMerger" name="SpectraMerger" version="2.2.0">
+<tool id="SpectraMerger" name="SpectraMerger" version="2.3.0">
   <description>Merges spectra (each MS level separately), increasing S/N ratios.</description>
   <macros>
     <token name="@EXECUTABLE@">SpectraMerger</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SpectraMerger
+  <command detect_errors="aggressive"><![CDATA[SpectraMerger
 
 #if $param_in:
   -in $param_in
@@ -112,7 +112,7 @@
   -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/>
     <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) ">
@@ -173,5 +173,5 @@
   <help>Merges spectra (each MS level separately), increasing S/N ratios.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraMerger.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraMerger.html</help>
 </tool>