# HG changeset patch # User galaxyp # Date 1493313101 14400 # Node ID 749f5425a9d3eb17f90076fa2fdfbb740360a088 # Parent 628fba9c27f715028769d2f552b84ba283c9e12d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 50c26f7fbe8a2bd1347c860d7a62480865efc254 diff -r 628fba9c27f7 -r 749f5425a9d3 readme.md --- a/readme.md Tue Apr 18 15:54:17 2017 -0400 +++ b/readme.md Thu Apr 27 13:11:41 2017 -0400 @@ -102,10 +102,32 @@ [...] ]]> ``` + + * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): + + ``` + + ``` + + * In `IDFileConverter.xml` and `FileConverter.xml` add `auto_format="true"` to the output, e.g.: - + - `` + - `` * To add an example test case to `DecoyDatabase.xml` add the following after the output section. If standard settings change you might have to adjust the options and/or the test files.