Mercurial > repos > galaxyp > openms_simplesearchengine

comparison SimpleSearchEngine.xml @ 1:0ca8724c404a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:52:58 -0400
parents 2f4218b98805
children 2fad35dc953d
comparison
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0:2f4218b98805 1:0ca8724c404a
20 #end if 20 #end if
21 #if $param_out: 21 #if $param_out:
22 -out $param_out 22 -out $param_out
23 #end if 23 #end if
24 #if $param_enzyme: 24 #if $param_enzyme:
25 -enzyme $param_enzyme 25 -enzyme
26 #if " " in str($param_enzyme):
27 "$param_enzyme"
28 #else
29 $param_enzyme
30 #end if
26 #end if 31 #end if
27 #if $param_precursor_mass_tolerance: 32 #if $param_precursor_mass_tolerance:
28 -precursor:mass_tolerance $param_precursor_mass_tolerance 33 -precursor:mass_tolerance $param_precursor_mass_tolerance
29 #end if 34 #end if
30 #if $param_precursor_mass_tolerance_unit: 35 #if $param_precursor_mass_tolerance_unit:
31 -precursor:mass_tolerance_unit $param_precursor_mass_tolerance_unit 36 -precursor:mass_tolerance_unit
37 #if " " in str($param_precursor_mass_tolerance_unit):
38 "$param_precursor_mass_tolerance_unit"
39 #else
40 $param_precursor_mass_tolerance_unit
41 #end if
32 #end if 42 #end if
33 #if $param_fragment_mass_tolerance: 43 #if $param_fragment_mass_tolerance:
34 -fragment:mass_tolerance $param_fragment_mass_tolerance 44 -fragment:mass_tolerance $param_fragment_mass_tolerance
35 #end if 45 #end if
36 #if $param_fragment_mass_tolerance_unit: 46 #if $param_fragment_mass_tolerance_unit:
37 -fragment:mass_tolerance_unit $param_fragment_mass_tolerance_unit 47 -fragment:mass_tolerance_unit
48 #if " " in str($param_fragment_mass_tolerance_unit):
49 "$param_fragment_mass_tolerance_unit"
50 #else
51 $param_fragment_mass_tolerance_unit
52 #end if
38 #end if 53 #end if
39 54
40 #if $rep_param_modifications_fixed: 55 #if $rep_param_modifications_fixed:
41 -modifications:fixed 56 -modifications:fixed
42 #for token in $rep_param_modifications_fixed: 57 #for token in $rep_param_modifications_fixed: