Mercurial > repos > galaxyp > openms_sequencecoveragecalculator

annotate SequenceCoverageCalculator.xml @ 9:e8da6c1d9ca4 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d4b74e94ddabaccec6b1c5f9540d074c39207600
author galaxyp
date Sat, 28 Oct 2017 04:53:28 -0400
parents 3a7000f26f98
children 5adf97f241ef
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9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Utilities]-->
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4 <tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="2.2.0">
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5 <description>Prints information about idXML files.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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8 <import>macros.xml</import>
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>SequenceCoverageCalculator
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9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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15 #if $param_in_database:
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16 -in_database $param_in_database
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17 #end if
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18 #if $param_in_peptides:
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19 -in_peptides $param_in_peptides
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20 #end if
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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21 #if $param_out:
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22 -out $param_out
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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23 #end if
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24 #if $adv_opts.adv_opts_selector=='advanced':
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25 #if $adv_opts.param_force:
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26 -force
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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27 #end if
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28 #end if
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29 </command>
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30 <inputs>
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31 <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database) "/>
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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32 <param name="param_in_peptides" type="data" format="idxml" optional="False" label="input file containing the identified peptides" help="(-in_peptides) "/>
9584ba614768 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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33 <expand macro="advanced_options">
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34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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35 </expand>
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36 </inputs>
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37 <outputs>
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38 <data name="param_out" format="txt"/>
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39 </outputs>
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40 <help>Prints information about idXML files.
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41
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43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html</help>
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44 </tool>