comparison SemanticValidator.xml @ 3:1707f652b6a0 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9

2:b0dd3db1e8c6

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Utilities]-->
<tool id="SemanticValidator" name="SemanticValidator" version="2.1.0">
  <description>SemanticValidator for semantically validating certain XML files.</description>
  <macros>
    <token name="@EXECUTABLE@">SemanticValidator</token>
    <import>macros.xml</import>
  </macros>

#end if
#end if
> $param_stdout
</command>
  <inputs>
    <param name="param_in" type="data" format="mzid,traml,mzml" optional="False" label="Input file (any xml file)" help="(-in) "/>
    <param name="param_mapping_file" type="data" format="" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
    <param name="param_cv" type="data" format="" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>

3:1707f652b6a0

<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Utilities]-->
<tool id="SemanticValidator" name="SemanticValidator" version="2.2.0">
  <description>SemanticValidator for semantically validating certain XML files.</description>
  <macros>
    <token name="@EXECUTABLE@">SemanticValidator</token>
    <import>macros.xml</import>
  </macros>

#end if
#end if
> $param_stdout
</command>
  <inputs>
    <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/>
    <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
    <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>