# HG changeset patch
# User galaxyp
# Date 1492545124 14400
# Node ID 5be3bb0724e9651cc4ed0569f749ad58b33e9c9a
# Parent  44ab28351d2aaefd73b9e2a7dbe2b808871cf727
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb

diff -r 44ab28351d2a -r 5be3bb0724e9 RTModel.xml
--- a/RTModel.xml	Wed Mar 01 10:05:04 2017 -0500
+++ b/RTModel.xml	Tue Apr 18 15:52:04 2017 -0400
@@ -25,7 +25,12 @@
   -out $param_out
 #end if
 #if $param_svm_type:
-  -svm_type $param_svm_type
+  -svm_type
+  #if " " in str($param_svm_type):
+    "$param_svm_type"
+  #else
+    $param_svm_type
+  #end if
 #end if
 #if $param_nu:
   -nu $param_nu
@@ -37,7 +42,12 @@
   -c $param_c
 #end if
 #if $param_kernel_type:
-  -kernel_type $param_kernel_type
+  -kernel_type
+  #if " " in str($param_kernel_type):
+    "$param_kernel_type"
+  #else
+    $param_kernel_type
+  #end if
 #end if
 #if $param_degree:
   -degree $param_degree
diff -r 44ab28351d2a -r 5be3bb0724e9 readme.md
--- a/readme.md	Wed Mar 01 10:05:04 2017 -0500
+++ b/readme.md	Tue Apr 18 15:52:04 2017 -0400
@@ -39,10 +39,10 @@
  * clone or install CTD2Galaxy
 
     ```bash
-    git clone https://github.com/blankclemens/CTD2Galaxy.git
+    git clone https://github.com/WorkflowConversion/CTD2Galaxy.git
     ```
     
- * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. 
+ * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. The default files are provided in this repository.
 
     ```bash
     python generator.py \ 
@@ -102,13 +102,6 @@
     [...]
     ]]>
     ```
- * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line
- 
-        -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit
-     
-   and change it to
-   
-        -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit"
 
  * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: