diff RTModel.xml @ 11:9aa90b293884 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/RTModel.xml	Mon Feb 12 09:03:23 2018 -0500
+++ b/RTModel.xml	Wed May 15 07:00:52 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Peptide property prediction]-->
-<tool id="RTModel" name="RTModel" version="2.2.0">
+<tool id="RTModel" name="RTModel" version="2.3.0">
   <description>Trains a model for the retention time prediction of peptides from a training set.</description>
   <macros>
     <token name="@EXECUTABLE@">RTModel</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>RTModel
+  <command detect_errors="aggressive"><![CDATA[RTModel
 
 #if $param_in:
   -in $param_in
@@ -138,7 +138,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml,txt" optional="True" label="This is the name of the input file (RT prediction)" help="(-in) It is assumed that the file type is idXML. Alternatively you can provide a .txt file having a sequence and the corresponding rt per line. &lt;br&gt;"/>
     <param name="param_in_positive" type="data" format="idxml" optional="True" label="input file with positive examples (peptide separation prediction)" help="(-in_positive) "/>
@@ -196,5 +196,5 @@
   <help>Trains a model for the retention time prediction of peptides from a training set.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_RTModel.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_RTModel.html</help>
 </tool>