# HG changeset patch
# User galaxyp
# Date 1503082534 14400
# Node ID 3b44b76e51596c0a31b7c2b7042856e83e5ffd0a
# Parent  0eeb62f3f05e38df9cde32c4f7728c1ba4cf0cbf
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8d70dbb6c61659d5ced433b168a2a4e32c9af677

diff -r 0eeb62f3f05e -r 3b44b76e5159 readme.md
--- a/readme.md	Fri Aug 18 14:07:26 2017 -0400
+++ b/readme.md	Fri Aug 18 14:55:34 2017 -0400
@@ -69,6 +69,7 @@
      omssa_executable pepnovo_executable \
      xtandem_executable param_model_directory \
      java_executable java_memory java_permgen \
+     r_executable rt_concat_trafo_out \
     -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \
     -s PATH/TO/SKIP_TOOLS_FILES.txt
     ```
@@ -117,6 +118,14 @@
     ]]>
     ```
     
+ * In `MetaProSIP.xml` add `R` as a requirement:
+ 
+   ```
+   <expand macro="requirements">
+       <requirement type="package" version="3.3.1">r-base</requirement>
+   </expand>
+   ```
+   
  * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where):
  
    ```